Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F210 I1 R1	4928	340.1	5480506	96.9%	5310610	252.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,541,383	3 bp→CGA	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,541,383	0	G	C	99.7%	921.4 / NA	384	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (171/212); minor base A (1/0); total (172/212)
Fisher's exact test for biased strand distribution p-value = 4.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,541,384	0	C	G	99.7%	903.9 / NA	384	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (1/0); new base G (171/211); total (172/212)
Fisher's exact test for biased strand distribution p-value = 4.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,541,385	0	T	A	99.7%	918.2 / NA	384	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base T (0/1); new base A (172/209); total (172/212)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 384 total aligned reads displayed.

TCGCCAGACCGGAGCCACGGAGTTTGGCCTCTGTCGGCCAGATTTCAGGGACATACACTGCGCTGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGACTATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATGCTGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCACTATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGGCTTTCCAGC  >  CP042583/1541103‑1541662

|||

        ccGGAGCCACGGAGTTTGGCCTCTGTCGGCCAGATTTCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTa                                                                                                                                                                                                                                                                          <  1:2022034/288‑1 (MQ=255)

           gggCCACGGGGTTTGGCCCCTGGAGGCCAGATTTCAGGGACATACACTGCCGAGGCATGGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTa                                                                                                                                                                                                                                                                          <  2:778377/283‑1 (MQ=255)

              ccACGGGGTTTGGCCTCTGTCGGCCAGATTTCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATcccc                                                                                                                                                                                                                                                                    <  2:2287246/288‑1 (MQ=255)

                aCGGAGTTTGGCCTCTGTCGGCCAGATTTCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTgg                                                                                                                                                                                                                                                                 <  1:1654418/289‑1 (MQ=255)

                 cGGAGTTTGGCCTCTGTCGGCCAGATTTCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTggg                                                                                                                                                                                                                                                                >  2:134932/1‑289 (MQ=255)

                  ggAGTTTGGCCTCTGTCGGCCAGATTTCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGt                                                                                                                                                                                                                                                               <  1:2533059/289‑1 (MQ=255)

                         ggCCTCTGTCGGCCAGATTTCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAat                                                                                                                                                                                                                                                        >  2:759427/1‑289 (MQ=255)

                                   ggCCAGATTTCAGGGACATACACTGCCGAGGCATAGCAAAAG‑TACATATAGACTAAAGTAATCAGGAAGAAACCAAACAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCa                                                                                                                                                                                                                                              <  2:2374593/289‑1 (MQ=255)

                                      cAGATTTCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATCTCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTACAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAAc                                                                                                                                                                                                                                            <  1:1275819/288‑1 (MQ=255)

                                         aTTTCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGt                                                                                                                                                                                                                                                               >  2:1252075/1‑266 (MQ=255)

                                          tttCAGGGACATACACTGCCGAAGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAATGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGtt                                                                                                                                                                                                                                       <  2:882762/289‑1 (MQ=255)

                                            tCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTaa                                                                                                                                                                                                                                     <  2:1779704/289‑1 (MQ=255)

                                            tCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTaa                                                                                                                                                                                                                                     <  2:421321/289‑1 (MQ=255)

                                            tCAGGGACATACACTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTaa                                                                                                                                                                                                                                     <  2:1872714/289‑1 (MQ=255)

                                            tCAAGGAAATACAATGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTaa                                                                                                                                                                                                                                     <  2:817593/289‑1 (MQ=255)

                                                    atacaccggccaggCAAAACAAACGTTACA‑ATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGTAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAgtgtg                                                                                                                                                                                                                             <  2:2689649/277‑1 (MQ=255)

                                                      acacTGCCGAGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTa                                                                                                                                                                                                                           <  2:104682/289‑1 (MQ=255)

                                                          tgccgaggCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTa                                                                                                                                                                                                                                  <  1:228515/272‑1 (MQ=255)

                                                          tgccgaggCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGc                                                                                                                                                                                                                       >  2:2485461/7‑289 (MQ=255)

                                                            ccgaggCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGcac                                                                                                                                                                                                                     >  1:530319/5‑289 (MQ=255)

                                                            ccgaggCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGcac                                                                                                                                                                                                                     >  1:1970074/5‑289 (MQ=255)

                                                                               aCATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAg                                                                                                                                                                                                   <  1:370832/289‑1 (MQ=255)

                                                                                cATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCa                                                                                                                                                                                                                                              <  2:2003108/245‑1 (MQ=255)

                                                                                    taGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGcacac                                                                                                                                                                                              <  1:2106115/289‑1 (MQ=255)

                                                                                     aGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAATATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGt                                                                                                                                                                                                                                                               >  2:1651854/1‑223 (MQ=255)

                                                                                     aGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTaa                                                                                                                                                                                                                                     <  1:2676881/249‑1 (MQ=255)

                                                                                     aGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTa                                                                                                                                                                                                                                  >  2:2547691/1‑252 (MQ=255)

                                                                                       aCGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCATACAag                                                                                                                                                                                           >  2:672556/1‑289 (MQ=255)

                                                                                        cGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACaa                                                                                                                                                                                            <  1:75671/287‑1 (MQ=255)

                                                                                        cGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACaa                                                                                                                                                                                            <  2:1211974/287‑1 (MQ=255)

                                                                                        cGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACACATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACaa                                                                                                                                                                                            <  1:909826/287‑1 (MQ=255)

                                                                                           aaGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACaa                                                                                                                                                                                            >  2:2632351/1‑284 (MQ=255)

                                                                                           aaGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACaa                                                                                                                                                                                            <  1:2632351/284‑1 (MQ=255)

                                                                                           aaGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAagag                                                                                                                                                                                         >  1:1146352/1‑287 (MQ=255)

                                                                                           aaGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGc                                                                                                                                                                                        >  2:549883/1‑288 (MQ=255)

                                                                                            aGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCt                                                                                                                                                                                      >  2:1526613/1‑289 (MQ=255)

                                                                                                 tCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAata                                                                                                                                                                                  >  1:481606/1‑288 (MQ=255)

                                                                                                     gaagaaACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTT‑AAACAATCGAGTCTTTTAAATTAATccc                                                                                                                                                                                                                                                                     <  1:289471/200‑1 (MQ=255)

                                                                                                        gaaACCAATCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGcaca                                                                                                                                                                                                                    >  1:2166029/1‑247 (MQ=255)

                                                                                                               aTCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTa                                                                                                                                                                   >  2:789762/1‑289 (MQ=255)

                                                                                                                tCAACGTTATGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCAcg                                                                                                                                                                             >  2:916275/1‑278 (MQ=255)

                                                                                                                         tGAGCAACATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGCCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGTGTCATGAATATTGTTGGCa                                                                                                                                                                                                                                              >  1:2265812/1‑204 (MQ=255)

                                                                                                                              aaCATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTa                                                                                                                                                                                                                                                                          <  2:2442220/171‑1 (MQ=255)

                                                                                                                              aaCATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTa                                                                                                                                                                                                                                                                          >  1:2442220/1‑171 (MQ=255)

                                                                                                                              aaCATACTGGTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCAcg                                                                                                                                                                             <  2:493899/264‑1 (MQ=255)

                                                                                                                                      ggTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAATTTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGctgaa                                                                                                                                            >  1:2355698/1‑285 (MQ=255)

                                                                                                                                       gTTTGCAGTGAATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTaa                                                                                                                                                                                                                                     <  1:809392/199‑1 (MQ=255)

                                                                                                                                          tgcagtgaataGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATTGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACaa                                                                                                                                                                                            >  1:1874066/9‑237 (MQ=255)

                                                                                                                                               tgaataGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGca                                                                                                                                                                                                 <  2:2137274/224‑1 (MQ=255)

                                                                                                                                                 aataGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCAcc                                                                                                                                   >  1:78439/2‑287 (MQ=255)

                                                                                                                                                      atatatCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTaa                                                                                                                                                                                                                                     <  2:1155447/184‑1 (MQ=255)

                                                                                                                                                           tCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATccc                                                                                                                                                                                                                                                                     >  2:2033284/1‑147 (MQ=255)

                                                                                                                                                           tCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAAc                                                                                                                                                                                                                                            >  1:626756/1‑172 (MQ=255)

                                                                                                                                                           tCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAAc                                                                                                                                                                                                                                            <  2:626756/172‑1 (MQ=255)

                                                                                                                                                           tCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAAt                                                                                                                                                                                                      <  1:1234027/210‑1 (MQ=255)

                                                                                                                                                           tCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGgcgc                                                                                                                        >  1:1521268/1‑288 (MQ=255)

                                                                                                                                                           tCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCt                                                                                                                       >  2:2174563/1‑289 (MQ=255)

                                                                                                                                                                gCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCt                                                                                                                                                           >  1:720343/1‑248 (MQ=255)

                                                                                                                                                                gCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCt                                                                                                                                                           <  2:720343/248‑1 (MQ=255)

                                                                                                                                                                gCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTAcc                                                                                                                  >  1:1362182/1‑289 (MQ=255)

                                                                                                                                                                    cGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGtca                                                                                                              >  2:2317668/1‑289 (MQ=255)

                                                                                                                                                                      cAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTAcc                                                                                                                  <  2:1409935/283‑1 (MQ=255)

                                                                                                                                                                      cAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGtcatc                                                                                                            >  1:47095/1‑289 (MQ=255)

                                                                                                                                                                      cAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGAAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGtcatc                                                                                                            >  1:2242354/1‑289 (MQ=255)

                                                                                                                                                                      cAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCAAGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGTTGAATGCGGCACCGCTTGCGGCGCTTTACCGtcatt                                                                                                            >  1:1012839/1‑288 (MQ=255)

                                                                                                                                                                              aTTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGAAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAAt                                                                                                      <  2:2242354/287‑1 (MQ=255)

                                                                                                                                                                                   tAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACaa                                                                                                                                                                                            <  1:2571181/196‑1 (MQ=255)

                                                                                                                                                                                       cccACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTACAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATTCTCCTGTCAGTAAGGCTGAATACTGCACCGACTGTGGCGATTGATCGTCCACCGCAAGCACcacaaccg                                                                                           >  2:1813706/1‑285 (MQ=255)

                                                                                                                                                                                       cccACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCAcg                                                                                                                                                                             <  2:961625/207‑1 (MQ=255)

                                                                                                                                                                                         cacaCCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTa                                                                                                                                                                                                                                                                          <  2:322598/112‑1 (MQ=255)

                                                                                                                                                                                         cacaCCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTa                                                                                                                                                                                                                                                                          >  1:322598/1‑112 (MQ=255)

                                                                                                                                                                                         cacaCCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAggcggc                                                                                         <  1:952730/289‑1 (MQ=255)

                                                                                                                                                                                           cacCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGc                                                                                                                                      >  2:1962345/1‑242 (MQ=255)

                                                                                                                                                                                                aTTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTaa                                                                                                                                                                                                                                     <  1:1913110/142‑1 (MQ=255)

                                                                                                                                                                                                aTTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCAcg                                                                                                                                                                             >  1:1334865/1‑198 (MQ=255)

                                                                                                                                                                                                aTTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCAcg                                                                                                                                                                             <  2:1291885/198‑1 (MQ=255)

                                                                                                                                                                                                aTTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGtt                                                                                  >  1:1741898/1‑289 (MQ=255)

                                                                                                                                                                                                       tACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGt                                                                           <  1:981079/289‑1 (MQ=255)

                                                                                                                                                                                                        aCGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTtg                                                                                                                              >  1:2080766/1‑237 (MQ=255)

                                                                                                                                                                                                        aCGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCg                                                                            >  1:768943/1‑287 (MQ=255)

                                                                                                                                                                                                         cgcgGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCCGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCg                                                                            >  1:1539353/1‑286 (MQ=255)

                                                                                                                                                                                                                      ccctCACCAGCATGGCAATAAAAATACC‑AAATTGCGAGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGcc                                                            <  2:2263821/286‑1 (MQ=255)

                                                                                                                                                                                                                      ccATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGcc                                                            <  1:2317668/289‑1 (MQ=255)

                                                                                                                                                                                                                      ccATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGcc                                                            <  1:645367/289‑1 (MQ=255)

                                                                                                                                                                                                                      ccATCACCAGAATGGCAATAAAAATACCAAAATGGTG‑GGCAAACATACTCATGGAATTTAAAACAATCGAGGCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTAATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGcc                                                            <  2:2212325/289‑1 (MQ=255)

                                                                                                                                                                                                                      ccATAACCAACATGGCAATAAAAATACC‑AAATGGCCCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCGGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGcc                                                            <  2:1704397/289‑1 (MQ=255)

                                                                                                                                                                                                                        aTCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAGTTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCctt                                                          <  2:340149/289‑1 (MQ=255)

                                                                                                                                                                                                                        aTCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAAt                                                                                                                                                                                                      >  2:2072321/1‑149 (MQ=255)

                                                                                                                                                                                                                             cAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTc                                                                                                                                                             <  2:461083/185‑1 (MQ=255)

                                                                                                                                                                                                                                cATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCtat                                                   >  1:1099754/1‑288 (MQ=255)

                                                                                                                                                                                                                                              tACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACtt                                     >  1:87664/1‑288 (MQ=255)

                                                                                                                                                                                                                                                    aaTGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCgg                               <  1:2136513/289‑1 (MQ=255)

                                                                                                                                                                                                                                                    aaTGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCgg                               <  2:2581465/289‑1 (MQ=255)

                                                                                                                                                                                                                                                    aaTGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCgg                               <  1:1795826/289‑1 (MQ=255)

                                                                                                                                                                                                                                                    aaTGGCGCGCCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCgg                               <  1:116396/289‑1 (MQ=255)

                                                                                                                                                                                                                                                     atcgtgcgcCAAACCTACTCATTGTATTTAATCCAAGCGAGTCTTTTAAATTAAGCTCCTGGGTCATGAATATGTTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATTACGCGTTTCAGTAATACTCCTGGCAGAAAGGCTAAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGc                              <  2:2125793/284‑1 (MQ=255)

                                                                                                                                                                                                                                                         cgcgcCAAACATACTCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGcc                                                            >  1:1475067/1‑255 (MQ=255)

                                                                                                                                                                                                                                                                       tCATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCcgcg            <  1:452209/289‑1 (MQ=255)

                                                                                                                                                                                                                                                                        cATGGTATTTAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGcc                                                            <  1:2212677/240‑1 (MQ=255)

                                                                                                                                                                                                                                                                                 tAAAACAATCGAGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCTGAATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGCGATTccagc  <  2:1508776/289‑1 (MQ=255)

|||

TCGCCAGACCGGAGCCACGGAGTTTGGCCTCTGTCGGCCAGATTTCAGGGACATACACTGCGCTGGCATAGCAAACG‑TACATATAGACGAAAGTAATCAGGAAGAAACCAATCAACGTTATGAGCAACATACTGGTTTGCAGACTATAGATATATCCGAGCACCGCAATCAGGATTAATAGCCCCACACCCATTGTTTTACGCGGAATTTTATCCATCACCAGCATGGCAATAAAAATACC‑AAATGGCGCGCCAAACATACTCATGGTATTTAAAACAATGCTGTCTTTTAAATTAATCCCCTGGGTCATGAATATTGTTGGCAACCAGTTAATTAGTGTGTACTGCACAACGTTCATGGCAATCAGCACACAAGAGCCTAATATCACGCGTTTCAGTAATACTCCTGTCAGTAAGGCACTATACGGCACCGCTTGTGGCGCTTTACCGTCATCAGCAATAACCACAGGCGGCAAAGGTTTACCCGTCTGGCGTATGACGCCTTCTTCTATACTCCGCATGACTTTCTCGGCTTCCTGATACCGTCCGCGGCTTTCCAGC  >  CP042583/1541103‑1541662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A