Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,544,468 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,544,4680GC99.4% 783.0 / NA 332intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (2/0);  new base C (172/157);  total (175/157)
Fisher's exact test for biased strand distribution p-value = 5.00e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,544,4690CG99.7% 784.8 / NA 332intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (174/155);  total (175/157)
Fisher's exact test for biased strand distribution p-value = 4.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,544,4700TA99.7% 788.8 / NA 332intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base A (174/157);  total (175/157)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 332 total aligned reads displayed.

CATCACAGTTACCGCAACGAATTTCTATGCGCTGCATTCCATGACTCAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCGCTAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGA  >  CP042583/1544188‑1544749
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                       
        ttACCGCAACGAATTTCTATGCGCTGCATTCCATGTGACAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTttatta                                                                                                                                                                                                                                                                               >  2:1519987/1‑285 (MQ=255)
        ttACCGCAACGAATTTCTATGCGCTGCATTCCATGTGACAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTttatta                                                                                                                                                                                                                                                                               <  1:1519987/285‑1 (MQ=255)
        ttACCGCAACGAATTTCTATGCGCTGCATTCCATGTGACAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCa                                                                                                                                                                                                                                                                           >  1:1347864/1‑289 (MQ=255)
                aCGAATTTCTATGCGCTGCATTCCATGTGACAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCtt                                                                                                                                                                                                                                                                    >  1:1416938/1‑287 (MQ=255)
                             cgcTGCATTCCATGTGACAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTaa                                                                                                                                                                                                                                                      >  2:1917496/1‑289 (MQ=255)
                              gcTGCATTCCAGTGGACAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAAt                                                                                                                                                                                                                                                     <  2:144049/289‑1 (MQ=255)
                                   aTTCCATGTGACAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTg                                                                                                                                                                                                                                                 <  1:735536/288‑1 (MQ=255)
                                   aTTCCATGTGACAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTg                                                                                                                                                                                                                                                 <  1:1328430/288‑1 (MQ=255)
                                    ttccacgtgacAAGTCTTTGATATGTCGAATGGATTCTTCACTTACCGGTTCGAAGAAACGGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCt                                                                                                                                                                                                                                               <  2:408021/279‑1 (MQ=255)
                                    ttCCATGTGACAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCt                                                                                                                                                                                                                                               <  2:1642748/289‑1 (MQ=255)
                                      ccatgtgacAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTca                                                                                                                                                                                                                                             <  1:1000787/281‑1 (MQ=255)
                                      ccatgtgacAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTca                                                                                                                                                                                                                                             <  1:2076195/281‑1 (MQ=255)
                                      ccatgtgacAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTca                                                                                                                                                                                                                                             <  1:599225/281‑1 (MQ=255)
                                        atgtgacAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTcaca                                                                                                                                                                                                                                           >  2:558228/7‑289 (MQ=255)
                                            gacAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCATTTCTTCTTGCG‑AAGGTTTTTTAGCCATTTGCTCACATCTCCCTTTATTCTTGCCCACAttca                                                                                                                                                                                                                                       >  2:2373220/3‑287 (MQ=255)
                                            gacAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTAc                                                                                                                                                                                                                                       >  1:2518802/3‑289 (MQ=255)
                                                 gTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCCGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCCGTTCTTC‑GGCCGAAGGTTTATTAGCCATTTGCTAACATCTCAATTTAATCTTGCTCCCATTACGTg                                                                                                                                                                                                                                    >  2:1224351/1‑287 (MQ=255)
                                                 gTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTg                                                                                                                                                                                                                                    >  1:1554852/1‑287 (MQ=255)
                                                 gTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTg                                                                                                                                                                                                                                    >  2:474758/1‑287 (MQ=255)
                                                 gTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTg                                                                                                                                                                                                                                    >  1:2242331/1‑287 (MQ=255)
                                                   cTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTCCGTGACTg                                                                                                                                                                                                                                >  2:679261/1‑289 (MQ=255)
                                                    tttGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTATCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTTACTGa                                                                                                                                                                                                                               >  1:762744/1‑289 (MQ=255)
                                                           taACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGCTTCTGCGTCACGTAAAACTGCATCTCGGACAACTTTTTTTTCAGTTCTTC‑TGCCGAATGATTATTAGCCATTTTCTCACCTCTCACTTTAATCTATCTCACATTACGTGACTGATTCTAAc                                                                                                                                                                                                                        >  2:763411/1‑289 (MQ=255)
                                                            aaCGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCCCTTTAATCGTGCTCACATTACGTGACTGATTCTAACa                                                                                                                                                                                                                       >  2:2689983/1‑289 (MQ=255)
                                                            aaCGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTa                                                                                                                                                                                                                                        >  1:509253/1‑272 (MQ=255)
                                                            aaCGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTaaaa                                                                                                                                                                                                                       >  2:1318109/1‑287 (MQ=255)
                                                            aaCGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTAAATCGTg                                                                                                                                                                                                                                                 <  1:269680/263‑1 (MQ=255)
                                                             actatggaaTTCTTCCCTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACaa                                                                                                                                                                                                                      <  1:2523587/281‑1 (MQ=255)
                                                                                aCCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGc                                                                                                                                                                                                   >  2:2307820/1‑289 (MQ=255)
                                                                                   ggTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGTTTCTAACAAAACATTAACACCAACTGGCaaa                                                                                                                                                                                                >  2:2734482/1‑289 (MQ=255)
                                                                                                  ggCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCt                                                                                                                                                                                                                                                                     <  2:2076284/205‑1 (MQ=255)
                                                                                                  ggCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACAtct                                                                                                                                                                                                                                                              <  1:1089536/212‑1 (MQ=255)
                                                                                                    ccagccaCAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCCCACATCTCACTTTAATCGTGCTCACATTACGTGACTTATTCTAACAAAACATTAACACCAACCGGCAAAATTTTGTCCTAAACtgt                                                                                                                                                                               >  2:1277724/1‑287 (MQ=255)
                                                                                                       gccaCAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCCTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTAACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGCCCTACCCTTGa                                                                                                                                                                              >  2:351266/1‑287 (MQ=255)
                                                                                                               cGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTcga                                                                                                                                                                        <  1:1917496/285‑1 (MQ=255)
                                                                                                                 gAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACAtct                                                                                                                                                                                                                                                              >  1:400008/1‑197 (MQ=255)
                                                                                                                      aTACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTg                                                                                                                                                             <  1:229354/289‑1 (MQ=255)
                                                                                                                              tttGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGCCAAAATTTTGTCCTAAACTTGATCTCGAAGAACTGGCTGCACCTaaa                                                                                                                                                     >  2:879549/1‑289 (MQ=255)
                                                                                                                                  ggAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTc                                                                                                                                                                                        >  2:2473579/1‑250 (MQ=255)
                                                                                                                                  ggAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTc                                                                                                                                                                                        <  1:2473579/250‑1 (MQ=255)
                                                                                                                                              cGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGATTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATc                                                                                                                                                   >  1:2176445/1‑275 (MQ=255)
                                                                                                                                                gggCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACAt                                                                                                                                   >  1:1973122/1‑289 (MQ=255)
                                                                                                                                                   cATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTtta                                                                                                                                                                                                                                                                                  >  1:688910/1‑143 (MQ=255)
                                                                                                                                                   cATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACAACAACGGGCAAAATTTTGTCCTAAAATTGa                                                                                                                                                                              >  2:1373958/1‑243 (MQ=255)
                                                                                                                                                           aTCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACa                                                                                                                                                                                                                  <  1:2110336/199‑1 (MQ=255)
                                                                                                                                                                aCAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGa                                                                                                                                                                                                                                   >  1:1288064/1‑177 (MQ=255)
                                                                                                                                                                aCAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGc                                                                                                                                                               >  1:1637698/1‑245 (MQ=255)
                                                                                                                                                                     gATATTCGCCGTCACGCTTGTTATGCAGTAACAGACCCGTAAATGGCGGCTCTGTTCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCTAAGGTTTATTAGCCATTTTCTCACATCTCACTTTCATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCttt                                                                                                               <  2:2406942/288‑1 (MQ=255)
                                                                                                                                                                     gATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGc                                                                                                                                                               <  2:2193418/240‑1 (MQ=255)
                                                                                                                                                                     gATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTa                                                                                                              >  1:148537/1‑289 (MQ=255)
                                                                                                                                                                      atatACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTaa                                                                                                             >  2:1678110/1‑289 (MQ=255)
                                                                                                                                                                         taCGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACaa                                                                                                                                                                                                                      <  1:296472/181‑1 (MQ=255)
                                                                                                                                                                           cGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCt                                                                                                                                                                                                                                                                     <  1:862890/132‑1 (MQ=255)
                                                                                                                                                                           cGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCt                                                                                                                                                                                                                                                                     >  2:862890/1‑132 (MQ=255)
                                                                                                                                                                              cGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCGGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAAt                                                                                                                                        >  1:179608/1‑254 (MQ=255)
                                                                                                                                                                              cGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAAt                                                                                                                                        <  2:179608/254‑1 (MQ=255)
                                                                                                                                                                              cGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCggg                                                                                                     >  1:89789/1‑289 (MQ=255)
                                                                                                                                                                              cGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCggg                                                                                                     >  1:2215057/1‑289 (MQ=255)
                                                                                                                                                                              cGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCgg                                                                                                      <  2:1634173/288‑1 (MQ=255)
                                                                                                                                                                                tCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCCTGATTCTGCGTCACGTAACACTGCATCTCGGACAACTTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACTTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAACTTTGTCCTAAACATGATTTCGACGAAATGGCTGCACCTAAATCGTGATGAAACTCACATTTTTATCGTAATTGCCCTTTAAAATTCgggg                                                                                                    >  2:617253/1‑288 (MQ=255)
                                                                                                                                                                                tCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGgc                                                                                                   >  1:1172772/1‑289 (MQ=255)
                                                                                                                                                                                tCACGCTTGTTATGCAGAAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCCCCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGgc                                                                                                   >  2:371258/1‑289 (MQ=255)
                                                                                                                                                                                     cTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCg                                                                                               >  2:2410508/1‑288 (MQ=255)
                                                                                                                                                                                          tATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTCCCCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTACTGAAAATCACATTTTTATCGTCATTGCCCTTTAAAATTCGGTGCCCCGACCCCa                                                                                         >  2:255523/1‑289 (MQ=255)
                                                                                                                                                                                               aGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCAtgtg                                                                                     <  2:2234936/288‑1 (MQ=255)
                                                                                                                                                                                                gTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCgg                                                                                                      >  1:2584970/1‑270 (MQ=255)
                                                                                                                                                                                                gTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTgg                                                                                    >  2:1244065/1‑288 (MQ=255)
                                                                                                                                                                                                 tAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTgg                                                                                    >  2:1584028/1‑287 (MQ=255)
                                                                                                                                                                                                    aCGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCa                                                                               <  2:2518802/289‑1 (MQ=255)
                                                                                                                                                                                                    aCGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATCTTGTCCTAAACTTGATCTCGACGAAATGTCTGCACCTAAATCGTGATGAAAATCACCTTTTTATCGTAATTGCCTTTTAAAATTCTGGGCCCCGACCCCATGTTGTCTCa                                                                               >  2:1096129/1‑289 (MQ=255)
                                                                                                                                                                                                        cccGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGa                                                                                              <  1:2432868/270‑1 (MQ=255)
                                                                                                                                                                                                           gTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACaa                                                                                                                                                                                                                      <  1:2729496/147‑1 (MQ=255)
                                                                                                                                                                                                           gTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAACCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCAGACTCCATGTGGTCTCAGGCCaaa                                                                        >  2:2583566/1‑289 (MQ=255)
                                                                                                                                                                                                               aTGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACaa                                                                                                                                                                                                                      <  2:1463838/143‑1 (MQ=255)
                                                                                                                                                                                                               aTGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGa                                                                    <  2:2607740/289‑1 (MQ=255)
                                                                                                                                                                                                                   cggcTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑CGCCGAAGGTTTATTAGCCATTTGCTCACATCCCACTTTAATCGTGCTCACATTACGTGACAGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTACCCTTTAAAATTCGGGGCGCCGCCTCCATGTAGTCTCAAGCTCAGAGGAagag                                                                >  2:1264164/1‑289 (MQ=255)
                                                                                                                                                                                                                      ctctGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGaaa                                                                                                                                                                   >  2:1503128/1‑187 (MQ=255)
                                                                                                                                                                                                                           tCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTcaca                                                                                                                                                                                                                                           <  1:2358742/110‑1 (MQ=255)
                                                                                                                                                                                                                                tGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCGCTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGtct                                                                                 <  2:298896/259‑1 (MQ=255)
                                                                                                                                                                                                                                tGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagtcag                                                   <  1:2653564/289‑1 (MQ=255)
                                                                                                                                                                                                                                tGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagtcag                                                   <  2:1554852/289‑1 (MQ=255)
                                                                                                                                                                                                                                     cTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACaa                                                                                                                                                                                                                      <  2:716291/121‑1 (MQ=255)
                                                                                                                                                                                                                                     cTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagt                                                      <  1:188295/281‑1 (MQ=255)
                                                                                                                                                                                                                                     cTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTcgcg                                              >  1:13764/1‑289 (MQ=255)
                                                                                                                                                                                                                                     cTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTAACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACCAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCCCAGAATTGGCTCCACCTAAATCGTGATGTACCACACATTTTTATCGTAATTGCTCTTCAACATTCGGGGCGCCGACCCCATGTGGTCTCACTGCCATAGGAAGAGCTAGGTGagtcagtctgt                                              >  2:2254530/1‑286 (MQ=255)
                                                                                                                                                                                                                                        cGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTcgcg                                              >  1:976365/1‑286 (MQ=255)
                                                                                                                                                                                                                                        cGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTaa                                           >  2:186604/1‑289 (MQ=255)
                                                                                                                                                                                                                                         gTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTaa                                           <  2:1172772/288‑1 (MQ=255)
                                                                                                                                                                                                                                             cGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCCCCGACCCCATTTGGTCTCAAGCCCAAGGGAAGAGTGAGGCGAGTCAGTGCCGAAATGCtt                                      >  2:1346362/1‑289 (MQ=255)
                                                                                                                                                                                                                                             cGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAAAAAAACATTAACACCAACTGGCAAAAtt                                                                                                                                                                                             >  1:1584637/1‑138 (MQ=255)
                                                                                                                                                                                                                                                  aaCTGCATCTCGGACATATTTTTTTTCAGTTCTTC‑TGACGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGca                                 <  1:1237347/289‑1 (MQ=255)
                                                                                                                                                                                                                                                     tGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAg                                                                      <  1:1679089/249‑1 (MQ=255)
                                                                                                                                                                                                                                                       cATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGga                            >  1:640132/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        aTCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAACCTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCCAGTCAGTCGCTTAAGGCTTAGGCACAGgat                           >  2:204942/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        aTCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGca                                 <  1:352251/283‑1 (MQ=255)
                                                                                                                                                                                                                                                        aTCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGga                            <  1:2408449/288‑1 (MQ=255)
                                                                                                                                                                                                                                                          ctcGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGcc                                                                           <  1:345486/239‑1 (MQ=255)
                                                                                                                                                                                                                                                            cGGACAAATTTTTTTTCAGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACACCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGgattgat                       >  2:286115/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                             aGTTCTTC‑TGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGac      >  2:1739577/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                 cttc‑tGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGa  <  2:640132/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                       
CATCACAGTTACCGCAACGAATTTCTATGCGCTGCATTCCATGACTCAAGTCTTTGATATAACGAATGGATTCTTCACTTACCGGTTCGTAGAAACTGGGCCAGCCACAGCCGGAATCATACTTGGTTTGGGAATGAAACAGCGGGGCATCGCAGATCAAACAGTGATATACGCCGTCACGCTTGTTATGCAGTAAACGACCCGTAAATGGCGGCTCTGTCCCATGATTCTGCGTCACGTAAAACTGCATCTCGGACAAATTTTTTTTCAGTTCTTC‑TGCGCTAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCACAGGATTGATTTGTCGCAATGATTGACACGA  >  CP042583/1544188‑1544749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A