Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F167 I0 R1 453 183.6 3912170 91.8% 3591372 227.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 2,834,637 G→A 100% A482V (GCG→GTG)  hypF ← carbamoyltransferase HypF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077792,834,6370GA100.0% 524.2 / ‑6.7 156A482V (GCG→GTG) hypFcarbamoyltransferase HypF
Reads supporting (aligned to +/- strand):  ref base G (1/0);  major base A (78/72);  minor base C (2/2);  total (81/75)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.

Only 100 of 157 total aligned reads displayed.

TCCGGCACAAAGCGCAGGCACTGCGCCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGAAG  >  NC_007779/2834403‑2834870
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                         
tCCCGCACAAAGCGCAGGCACTGCGCCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAACTCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGAGCTCACAGT‑CGCGATAGTTCACCCGCAGTCACTCGCCGCCCCACACAGCGCCGATCTCCCCCCCACCCAAACCGTCGACCGCCAAAGCAATGCCATCCCCGCCACCCCACCGCCACTACTGCCCTGCCAGACAccccg                                                                                                                                                                                                                                        >  2:1279929/1‑238 (MQ=255)
    gCACAAAGCCCAGGCACTCCGCCAGCAGGATTCGCCACGGCGGCTTCGCTGCCAAATCGCCACCCGGCAGCGCCACTGCAGGCACGCCGCCCAGGTGCTCACATT‑AGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAACGCCGTCCCCCCCCATACCGATACCGGCCAGCGGCCAAGCAATGACCTCCCCACCCTACAGCGACCATTGATGACCAGCCCAACACAACGCTGCa                                                                                                                                                                                                                                   >  2:1315886/1‑239 (MQ=255)
     cccaAAGCGCAGGCACTGCGCCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCa                                                                                                                                                                                                                                   <  1:1765738/236‑1 (MQ=255)
     cacaAAGCGCAGGCACTGCGCCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGTCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCa                                                                                                                                                                                                                                   <  1:1821668/238‑1 (MQ=255)
        aaaGCGCAGGCACTGCGCCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATggg                                                                                                                                                                                                                               <  1:747983/239‑1 (MQ=255)
          aacgcAGGCACTGCGCCAGCAGGCTTCGCCACGGCTGCTTCGCTGCCAAATCACCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGGTCACCCGCAGGCACTCGGCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCAGCGATCGTCAACGCAATGACATCACCGCCAACCAGCGGCAACTGATGCTCTGCCAAACACACCGCTGCATgcgga                                                                                                                                                                                                                             >  2:268410/3‑235 (MQ=255)
             gcAGGCACTGCGCCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCatga                                                                                                                                                                                                                          <  1:1107336/239‑1 (MQ=255)
             gcAGGCACTGCGCCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCatga                                                                                                                                                                                                                          <  2:1916544/239‑1 (MQ=255)
             gcACGCCCTGCGCCAGCAGGTTTCGCCCCGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCCCTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATCGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCatga                                                                                                                                                                                                                          <  2:1299157/239‑1 (MQ=255)
              cAGGCACTGCGCCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAACCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCGGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCatga                                                                                                                                                                                                                          <  1:965090/238‑1 (MQ=255)
                      gcgcCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGCGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGt                                                                                                                                                                                                                 >  1:1689968/1‑239 (MQ=255)
                      gcgcCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGt                                                                                                                                                                                                                 >  1:147810/1‑239 (MQ=255)
                      gcgcCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAACTCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGCCACTCCCCCCCCCCCACACCGCCCTTCTCCCCCAAACCGACACCGGCGTGCGTCAAAGCAATGACATCACCCCCACCCACCGGCCCCTCATGCTGTGCCAGACACACCCCACGACGGGCatgagtggccact                                                                                                                                                                                                                 >  2:1047433/1‑230 (MQ=255)
                           agcagGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGt                                                                                                                                                                                                            >  1:1542284/1‑239 (MQ=255)
                            gcagGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGtt                                                                                                                                                                                                           >  2:1553467/1‑239 (MQ=255)
                             cagGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCa                                                                                                                                                                                                                   >  1:1812892/1‑230 (MQ=255)
                                 tttCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCg                                                                                                                                                                                                       >  1:1104608/1‑238 (MQ=255)
                                 tttCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCg                                                                                                                                                                                                       >  2:1490101/1‑238 (MQ=255)
                                    cGCCACGGCTGCTCAGCTGCCAAATCGCCACCCGGAAGCCCCACTGCAGGCAAGCGGCCCAGGTGCTCCCATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCgg                                                                                                                                                                                                   <  2:247977/239‑1 (MQ=255)
                                          ggCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGAt                                                                                                                                                                                              >  1:1469037/1‑238 (MQ=255)
                                           gctgctTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGACAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGCTACCGTCGAGCGTCAAAGCAACGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTCACGTTAGCGTCGGCAGAtt                                                                                                                                                                                             >  2:153916/1‑238 (MQ=255)
                                                     tGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGGCGGCAGATTCATTTCCcgc                                                                                                                                                                                   >  2:94835/1‑238 (MQ=255)
                                                      gCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCAcgcg                                                                                                                                                                                  >  1:1000531/1‑238 (MQ=255)
                                                          aaTCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCAc                                                                                                                                                                             <  1:1047433/239‑1 (MQ=255)
                                                                cACCCGGAGGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCActggctg                                                                                                                                                                       <  2:958722/239‑1 (MQ=255)
                                                                       aaGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACa                                                                                                                                                                 <  2:1100539/238‑1 (MQ=255)
                                                                          cgcCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAg                                                                                                                                                              >  1:12094/1‑238 (MQ=255)
                                                                             cACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCAATACCGATACCGCCGAGCGTCAAACAAATGACATCCCCGCCATCCAGCGCCCACTGATGCCCTGCCAGCCACCCCGCTCCATGGCCTTGATGATGCGGTACCGTTGGCGCCGCCAGATTCATTTAACGCGCCCACTGGCTGCAGCCATATCCCg                                                                                                                                                          >  2:1159968/1‑239 (MQ=255)
                                                                                       aacccccccAGGTGCTCCCATT‑CGCGATCGTTCCCCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTc                                                                                                                                                <  2:1549618/233‑1 (MQ=255)
                                                                                       aaGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGt                                                                                                                                                 <  1:1748050/238‑1 (MQ=255)
                                                                                       aaGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTc                                                                                                                                                <  2:957389/239‑1 (MQ=255)
                                                                                          ccgccCAGG‑GCCCACCTTGCGCGATAATTCACCCGCAGCCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTc                                                                                                                                                <  2:1471612/236‑1 (MQ=255)
                                                                                            gccCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGca                                                                                                                                           <  1:462525/239‑1 (MQ=255)
                                                                                            gccCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGc                                                                                                                                            >  1:404330/1‑238 (MQ=255)
                                                                                              ccAGGTGCTCACATT‑CGCGATAGTTCCCCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAAGGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGcaca                                                                                                                                         <  1:1500550/239‑1 (MQ=255)
                                                                                              ccAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGcaca                                                                                                                                         <  2:1378846/239‑1 (MQ=255)
                                                                                               cAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCCGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCCTTTGCGTAGGCAGATTCATTCCCCGCGCCCACTGGCTGGACACATAGCCAGGACGCGCGTCCTGcaaa                                                                                                                                         >  2:1171649/1‑236 (MQ=255)
                                                                                                gggTGCGCACATG‑CGCGTTAGTTCCCCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAAc                                                                                                                                       <  2:41779/238‑1 (MQ=255)
                                                                                                    gCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTAt                                                                                                                                   >  1:536188/1‑239 (MQ=255)
                                                                                                      tCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTg                                                                                                                                 <  1:1379478/239‑1 (MQ=255)
                                                                                                        ccaTT‑CGCGCTAGTTCACCCGCAGGCACGCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATGCCGTCGAGCGTCAAAGCAATGACAGCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCg                                                                                                                               <  2:54264/238‑1 (MQ=255)
                                                                                                        acaTT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCAcg                                                                                                                                                                                    >  1:440735/1‑186 (MQ=255)
                                                                                                            t‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCggggg                                                                                                                           >  1:1649947/1‑238 (MQ=255)
                                                                                                                cgATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGCTCTCCCCCATACCGATACCGTCGAGCGTCAAATCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGCGACCTAGACCGGACGCGCGTCATTCACCCCGTATTTCGGGGGaaa                                                                                                                        >  2:1240791/1‑239 (MQ=255)
                                                                                                                                  cgcTCGCCGCACCACACAGAGCGCATCACCCCCATCCCGTTACCCTCGGACGACAAAGCAGTGACATCACCGCCAGCGAGCGGCCACCGATGCTCTGCCAGAGAAACCGCTGCATGGGCATGAGGATGGAGTGCCGTTTTCGTCGGAGGTTTGATTTCACGGGCTCACTGGCTGGAGACATAGCCCCGATGCGCGTCATGCACAACCTATTGCGGGGTAAAATCGTAGATGTTTTGGAt                                                                                                      <  2:1588421/237‑1 (MQ=255)
                                                                                                                                  cACCCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCa                                                                                                       <  2:608909/238‑1 (MQ=255)
                                                                                                                                     tCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATc                                                                                                     <  2:291039/237‑1 (MQ=255)
                                                                                                                                     tCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATc                                                                                                     >  1:291039/1‑237 (MQ=255)
                                                                                                                                                  aaGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTcg                                                                                      <  1:1697126/239‑1 (MQ=255)
                                                                                                                                                      gcCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTcgcg                                                                                    <  1:593545/237‑1 (MQ=255)
                                                                                                                                                        cGTTCTCCCCCATACCGATAGCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAAAGCTTCGccccc                                                                                 >  2:1924289/1‑237 (MQ=255)
                                                                                                                                                        cGTTCTCCCCCATACCGATACCGTCGAGCGTCCAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACCTAGCCCGGATGCGCGTCATGCACCACGTATTGCCGGGTCAAATCGTAGCTGTTTTGCCTCAGGCGTAACGCTTCCCTCCa                                                                                 >  2:678487/1‑238 (MQ=255)
                                                                                                                                                        cGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGcc                                                                                  >  1:474767/1‑237 (MQ=255)
                                                                                                                                                        cGTACTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCAc                                                                                <  1:801919/239‑1 (MQ=255)
                                                                                                                                                          ttCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCgcgc                                                                                   <  2:1812529/234‑1 (MQ=255)
                                                                                                                                                                    taccgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCatga                                                                                                                                                                                                                          <  2:937406/89‑1 (MQ=255)
                                                                                                                                                                    taccgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCatga                                                                                                                                                                                                                          >  1:937406/1‑89 (MQ=255)
                                                                                                                                                                    taccgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGAt                                                                     >  1:277123/1‑238 (MQ=255)
                                                                                                                                                                    taccgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGAt                                                                     >  1:1286399/1‑238 (MQ=255)
                                                                                                                                                                    taccgataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGAt                                                                     >  1:1892429/1‑238 (MQ=255)
                                                                                                                                                                      ccgatccggGCGCGCGTCAAAGCAATGACATCCCCGCCGTCCAGAGGCCCCTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCGCACTGGCTGGAGGCAGAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGGAGATGTTTTGCATCAGGCGTAACGCTACGCGCCACTGGATCTGGATGcc                                                                  <  2:662510/239‑1 (MQ=255)
                                                                                                                                                                         ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATc                                                               >  1:686860/1‑239 (MQ=255)
                                                                                                                                                                         ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTa                                                                                                                          >  1:1319795/1‑180 (MQ=255)
                                                                                                                                                                         ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCAt                                                                >  2:1599803/1‑238 (MQ=255)
                                                                                                                                                                         ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCAt                                                                >  2:1513630/1‑238 (MQ=255)
                                                                                                                                                                         ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATc                                                               >  2:1339613/1‑239 (MQ=255)
                                                                                                                                                                         ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATc                                                               >  1:1119870/1‑239 (MQ=255)
                                                                                                                                                                         ataccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATc                                                               >  1:305260/1‑239 (MQ=255)
                                                                                                                                                                         ataccgTCGAGCGTCAAAGCAATGACATAACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGGTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGTGACATAGCCCGCATGCGCGTCATGCACACCGTACTGCGGGGTAAAATCGCAGATGTTTTGAATTAGGCTGAACGCCTCGCGCCACTGACTCTGGCTCCCAta                                                               >  2:1079655/1‑238 (MQ=255)
                                                                                                                                                                          tacggccGAGCGGCAAAGAAATGACATCACCGCCCTCCGGCGGCCACGGATGCTCTGCCAGACACCCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATc                                                               <  2:1892429/232‑1 (MQ=255)
                                                                                                                                                                          taccgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATc                                                               <  1:187418/238‑1 (MQ=255)
                                                                                                                                                                             cgTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGGATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTc                                                            >  2:828049/1‑238 (MQ=255)
                                                                                                                                                                               tCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCCCAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACt                                                         >  2:1030516/1‑239 (MQ=255)
                                                                                                                                                                               tCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACt                                                         >  1:1519672/1‑239 (MQ=255)
                                                                                                                                                                               tCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGGAAAATCGTAGATGTTTTGCATCAGGTGTAACGCTTCGCGCCACTGCATCTGGATGCCATAGACACt                                                         >  2:143313/1‑239 (MQ=255)
                                                                                                                                                                               tCGAGCGTCAAAGCAATGACATCACCGACATCCAGTGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGCTGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCCGACGCGCGTTATGCAAAAAGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCCCGCCACTGCAACTGGATGCCCTCGTCCCt                                                         >  2:360640/1‑239 (MQ=255)
                                                                                                                                                                                 gAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTa                                                       >  1:1084200/1‑239 (MQ=255)
                                                                                                                                                                                 gAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTa                                                       >  1:260038/1‑239 (MQ=255)
                                                                                                                                                                                    cGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACGGCATCTGGATGCCATCGTCACTTAAAt                                                    >  2:421822/1‑239 (MQ=255)
                                                                                                                                                                                     gacAAAGCAAGCACATCACCGCCATCCAGCGGCCACTGACGCTCTGCCAGACACACCGCTGCATGGGAATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAAt                                                    <  2:740651/236‑1 (MQ=255)
                                                                                                                                                                                     gTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAAt                                                    <  1:1924289/238‑1 (MQ=255)
                                                                                                                                                                                     gTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATc                                                   >  2:591341/1‑239 (MQ=255)
                                                                                                                                                                                      tCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGAAATAGCACGGATGCGCGTCATGCCCAACGGATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTAACACCACTGCATCTGACTGCCATCGGCAATTAAATc                                                   >  2:1890233/1‑238 (MQ=255)
                                                                                                                                                                                               tacaaTCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGc                                         <  2:830718/235‑1 (MQ=255)
                                                                                                                                                                                               tGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGc                                         <  1:954974/239‑1 (MQ=255)
                                                                                                                                                                                                gACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCt                                        <  1:1553467/239‑1 (MQ=255)
                                                                                                                                                                                                 aCATCCCCGCCAGCCAGCTGACCATGACGCTCGGCCAGACCGCCCGCTGCATGGGCAGGATGATGCAGTACCGTTGGCGTCGGCAGATTCATTTCACGCGCCCCCTGGATGGGGACATAGCCCGGTTGCGCGTCATGCACAACGTCGTGCGGGGTAAAATCGTAGATGTTTTGGTTCAGGCGTAACGCGTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGc                                         <  2:1255420/237‑1 (MQ=255)
                                                                                                                                                                                                           cATCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAacac                              <  1:1094075/238‑1 (MQ=255)
                                                                                                                                                                                                             tCCAGCGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGGATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCCCTTAAATCGCCCAGATGCTTACTCAACCCCg                            >  2:517262/1‑238 (MQ=255)
                                                                                                                                                                                                                  cGGCCACTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGt                       >  1:358675/1‑238 (MQ=255)
                                                                                                                                                                                                                      cACTGATGCTCGGCCAGACAGACCGCTTCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACTTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCAcc                  <  2:338257/239‑1 (MQ=255)
                                                                                                                                                                                                                       aCTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCgg                                                                                                                                                                                                   >  1:1131719/1‑61 (MQ=255)
                                                                                                                                                                                                                       aCTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCgg                                                                                                                                                                                                   <  2:1131719/61‑1 (MQ=255)
                                                                                                                                                                                                                       aCTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGcaca                                                                                                                                         >  2:988272/1‑119 (MQ=255)
                                                                                                                                                                                                                       aCTGATGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGcaca                                                                                                                                         <  1:988272/119‑1 (MQ=255)
                                                                                                                                                                                                                         cgATGCTCTGTCTGCCACACCGCTGCATGCGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGGTGGAGACATAGCCCGGATGCGCGTCATCCACAACGTATTGCGGGGTAAAAGCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGACATCGACACTTAAATCGcc                                                <  2:1842045/205‑1 (MQ=255)
                                                                                                                                                                                                                            tGCTCTGCCAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCCCCCAGATGCCGACTCAACACCGCTTGTTCACCGCCCa             >  2:1586857/1‑238 (MQ=255)
                                                                                                                                                                                                                                    cAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGa    <  1:992308/239‑1 (MQ=255)
                                                                                                                                                                                                                                    cAGACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGa    <  2:473033/239‑1 (MQ=255)
                                                                                                                                                                                                                                      gACACACCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGAAg  >  1:782613/1‑239 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                         
TCCGGCACAAAGCGCAGGCACTGCGCCAGCAGGTTTCGCCACGGCTGCTTCGCTGCCAAATCGCCACCCGGAAGCGCCACTGCAGGCAAGCCGCCCAGGTGCTCACATT‑CGCGATAGTTCACCCGCAGGCACTCGCCGCCCCACAAAGCGCCGTTCTCCCCCATACCGATACCGTCGAGCGTCAAAGCAATGACATCACCGCCATCCAGCGGCCACTGATGCTCTGCCAGACACGCCGCTGCATGGGCATGATGATGCAGTACCGTTTGCGTCGGCAGATTCATTTCACGCGCCCACTGGCTGGAGACATAGCCCGGATGCGCGTCATGCACAACGTATTGCGGGGTAAAATCGTAGATGTTTTGCATCAGGCGTAACGCTTCGCGCCACTGCATCTGGATGCCATCGTCACTTAAATCGCCCAGATGCTGACTCAACACCGCTTGTTCACCGCGCACCAGGCAGAAG  >  NC_007779/2834403‑2834870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A