Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F167 I0 R1 453 183.6 3912170 91.8% 3591372 227.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_007779 2,981,321 T→C 100% Q198Q (CAA→CAG)  kduD ← 2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0077792,981,3210TC100.0% 525.9 / ‑6.7 151Q198Q (CAA→CAG) kduD2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (85/65);  minor base G (0/1);  total (85/66)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 159 total aligned reads displayed.

ATTATGATGATCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATAAAGTGTTTCGCCGCTGCCTGAGACATGAAGAATA  >  NC_007779/2981086‑2981556
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           
aTTATGATGATCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAgctgt                                                                                                                                                                                                                                          >  1:452222/1‑239 (MQ=255)
aTTATGATGATCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAgctgt                                                                                                                                                                                                                                          >  2:602147/1‑239 (MQ=255)
aTTATGATGATCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAgctgt                                                                                                                                                                                                                                          >  2:441092/1‑239 (MQ=255)
   atgatgATCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGa                                                                                                                                                                                                                                       >  2:510721/1‑239 (MQ=255)
    tgatgaTCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAg                                                                                                                                                                                                                                      >  1:703289/1‑239 (MQ=255)
    tgatgaTCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAg                                                                                                                                                                                                                                      >  2:913356/1‑239 (MQ=255)
    tgatgaTCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAg                                                                                                                                                                                                                                      >  1:1772719/1‑239 (MQ=255)
    tgatgaTCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGCTGTTCAGTGGCCCGCAGctgttgcg                                                                                                                                                                                                                                      >  2:1045604/1‑237 (MQ=255)
         atCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTAttg                                                                                                                                                                                                                                 >  1:541534/1‑239 (MQ=255)
          tCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGCAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTAttgt                                                                                                                                                                                                                                >  2:823912/1‑239 (MQ=255)
            tACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTAttgttg                                                                                                                                                                                                                              >  1:108665/1‑239 (MQ=255)
              cAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTgg                                                                                                                                                                                                                             >  2:1373130/1‑238 (MQ=255)
                 gTATTAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCg                                                                                                                                                                                                                          >  1:851989/1‑238 (MQ=255)
                  tataAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCg                                                                                                                                                                                                                          <  1:441092/237‑1 (MQ=255)
                    taAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCAt                                                                                                                                                                                                                      >  1:712844/1‑239 (MQ=255)
                     aaaaaaCCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATTGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATg                                                                                                                                                                                                                     <  2:1331261/239‑1 (MQ=255)
                           cccTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAAcc                                                                                                                                                                                                                >  2:1944306/1‑238 (MQ=255)
                                        cAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcat                                                                                                                                                                                                  >  2:1246015/1‑239 (MQ=255)
                                          gggTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatta                                                                                                                                                                                                >  1:1132024/1‑239 (MQ=255)
                                          gggTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatta                                                                                                                                                                                                >  2:1759158/1‑239 (MQ=255)
                                          gggTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGca                                                                                                                                                                                                   >  2:1527089/1‑236 (MQ=255)
                                           ggTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatta                                                                                                                                                                                                >  2:259031/1‑238 (MQ=255)
                                            ggaaTAAAAGTAAGAAGTCTTGATTAACGGGCCAGCCAACCGCCAGCCCCGGCAATGGTATAACCATTCACATAATCTGAAGCACTGGAGGCAAGGAACTCTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGTGGCTATCGcatt                                                                                                                                                                                                 <  2:686151/233‑1 (MQ=255)
                                            gTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCTCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatt                                                                                                                                                                                                 <  2:1530039/236‑1 (MQ=255)
                                            gTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcattaa                                                                                                                                                                                               <  1:1760812/238‑1 (MQ=255)
                                            gTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatt                                                                                                                                                                                                 <  1:1527089/236‑1 (MQ=255)
                                            gTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGcatt                                                                                                                                                                                                 <  1:1559073/236‑1 (MQ=255)
                                                    aGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAAtgt                                                                                                                                                                                      <  1:311835/239‑1 (MQ=255)
                                                       aagaagAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAAtgttgt                                                                                                                                                                                   >  1:627497/1‑239 (MQ=255)
                                                       aagaagAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGCATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAAtgtt                                                                                                                                                                                     <  1:153491/237‑1 (MQ=255)
                                                               tgaatTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTAttgt                                                                                                                                                                                                                                <  2:1825756/186‑1 (MQ=255)
                                                               tgaatTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTAttgt                                                                                                                                                                                                                                >  1:1825756/1‑186 (MQ=255)
                                                                gaatTACCGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGccc                                                                                                                                                                          <  2:1431600/239‑1 (MQ=255)
                                                                       agcgcCAGCCAATCGCCATCCACGGCAATGGTATAACCATTCAGATAATCTGAAGCGCTGGAGGCACGGAACACTATCGCCCCCATCAGGTCACTCGGCAGTCTCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGATACAGTGTTCATCTGCCCGAAGCTGTAGAGTATTGTTGGTAGCCATGTAACCAGGGGCTATCGCATTAACATTAATTCTGTGTTTACCCCAttcgtt                                                                                                                                                                   >  2:818602/2‑239 (MQ=255)
                                                                           ccagccaACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGAAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGcc                                                                                                                                                               >  2:1827941/1‑239 (MQ=255)
                                                                                       cATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGt                                                                                                                                                    <  1:578202/238‑1 (MQ=255)
                                                                                       cATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTc                                                                                                                                                   <  2:108665/239‑1 (MQ=255)
                                                                                                   tGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCAcg                                                                                                                                       <  1:1117166/239‑1 (MQ=255)
                                                                                                       ataACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCAcgccg                                                                                                                                    >  2:396936/1‑238 (MQ=255)
                                                                                                        taACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCt                                                                                                                                  >  1:1410652/1‑239 (MQ=255)
                                                                                                        taACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCt                                                                                                                                  >  1:230008/1‑239 (MQ=255)
                                                                                                             aTTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTg                                                                                                                             >  1:1703252/1‑239 (MQ=255)
                                                                                                              ttCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAgctgtt                                                                                                                                                                                                                                         <  1:964595/130‑1 (MQ=255)
                                                                                                              ttCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGa                                                                                                                            >  1:695704/1‑239 (MQ=255)
                                                                                                              ttCACATAATCTGAAGCGCTGGAGGCAAGCTACACTATCGGCCCCATCATGTCACTCGCCAGTCTCCAACGACCAGCTGGAATGCGGTCGAGCATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGGTGAGGATTGTTGGTTGCCATGTAACCCTGGGCTATCGCCTTAACATTAATGTTGTGTTTAGACAATTCGTTCGACATCCATAGCGTCACACCCATCACGACGCTTTTTGa                                                                                                                            >  2:1337116/1‑239 (MQ=255)
                                                                                                               tacaatgaTCTGAGGCCCTGGGGGCAGGGAACACTATCGG‑CCCGCCAGGGCACCCGGCGTTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCAGTCGTTCGTCATCAAGCGCGTCACACCCAGCACGCCGCGTTTTGATg                                                                                                                          <  2:1544673/232‑1 (MQ=255)
                                                                                                               tCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGAt                                                                                                                           >  1:1359756/1‑239 (MQ=255)
                                                                                                               tCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGAt                                                                                                                           >  1:1521953/1‑239 (MQ=255)
                                                                                                                cacaTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg                                                                                                                          <  2:1521953/239‑1 (MQ=255)
                                                                                                                cacaTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg                                                                                                                          <  2:452222/239‑1 (MQ=255)
                                                                                                                cacaTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg                                                                                                                          <  1:823912/239‑1 (MQ=255)
                                                                                                                cacaTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg                                                                                                                          <  2:1772719/239‑1 (MQ=255)
                                                                                                                cacaTAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCACGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGAt                                                                                                                           >  2:1200322/1‑238 (MQ=255)
                                                                                                                     aaTCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGta                                                                                                                     >  2:1422864/1‑239 (MQ=255)
                                                                                                                       tCTGAAGCGCTGGAGGCAAGGAACACTATCTGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGTCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGtata                                                                                                                   >  2:1212404/1‑239 (MQ=255)
                                                                                                                       tCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGtata                                                                                                                   <  1:510721/239‑1 (MQ=255)
                                                                                                                               gcTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAgg                                                                                                             <  2:627497/237‑1 (MQ=255)
                                                                                                                                cTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGtata                                                                                                                   <  1:258954/230‑1 (MQ=255)
                                                                                                                                cTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGtata                                                                                                                   >  2:258954/1‑230 (MQ=255)
                                                                                                                                cTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGcac                                                                                                          >  1:931404/1‑239 (MQ=255)
                                                                                                                                cTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGcac                                                                                                          >  1:1906325/1‑239 (MQ=255)
                                                                                                                                        aaGGAACACTACCGGCCCCCTCAGGTCACTCGGCAGTCCCCCACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCAATGTACCCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCTTTCGCCATCAATCTCGTCACACCCATCACGCCGCTTTTTGATGCAGTATAAGAAGGCACACGGATc                                                                                                   <  2:334278/238‑1 (MQ=255)
                                                                                                                                         aGGAACACTATCGGCCCCATCAGGTCCCTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGAt                                                                                                                           <  1:793564/213‑1 (MQ=255)
                                                                                                                                             acacTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGcc                                                                                              >  2:514441/1‑238 (MQ=255)
                                                                                                                                              ccctcgcGGCCCAATCAGGTCACTCGGCAGTCCCCAACAGCCGGCTGTAGTGCCGTCGAGAATGTCCGCGCTACGTTATTCATCTGCCCGTAGCTGTTGATTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCAGTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCTTCACACCCATCACGCCGCTTTTTGATGCGGTATAATAAGGCACACAGATCCCGCCCt                                                                                            <  2:695704/233‑1 (MQ=255)
                                                                                                                                                   tCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCacac                                                                                                        <  1:1674148/222‑1 (MQ=255)
                                                                                                                                                   tCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCacac                                                                                                        >  2:1674148/1‑222 (MQ=255)
                                                                                                                                                     ggCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGga                                                                                     <  2:1132024/239‑1 (MQ=255)
                                                                                                                                                      gctccATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGCGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATCCGGCATAAGAAGGCACACGGCTCCCGCCCTGGAAGgag                                                                                    >  2:94247/4‑239 (MQ=255)
                                                                                                                                                      gCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg                                                                                                                          <  1:1259066/201‑1 (MQ=255)
                                                                                                                                                      gCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg                                                                                                                          >  2:1259066/1‑201 (MQ=255)
                                                                                                                                                      gCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGgag                                                                                    >  2:1714402/1‑239 (MQ=255)
                                                                                                                                                      gCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGgag                                                                                    >  1:775422/1‑239 (MQ=255)
                                                                                                                                                      gCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGgag                                                                                    >  1:622835/1‑239 (MQ=255)
                                                                                                                                                          cATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCa                                                                                <  2:1095368/239‑1 (MQ=255)
                                                                                                                                                           aTCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCGGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCAt                                                                               >  1:774747/1‑239 (MQ=255)
                                                                                                                                                           aTCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAAt                                                                                                                                                         <  1:195131/165‑1 (MQ=255)
                                                                                                                                                           aTCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCTTCACACCCATCACGCCGCTTTTTGATGCTGAATAAGAAGGCACACGTATCCCGCCCTGGAATGAAAGCAt                                                                               >  2:581728/1‑239 (MQ=255)
                                                                                                                                                           aTCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGTTATAAGAAGGCCCACGGATCCCGCCCTGGAAGGACAGCAt                                                                               >  2:706094/1‑239 (MQ=255)
                                                                                                                                                             cAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg                                                                                                                          <  1:702350/194‑1 (MQ=255)
                                                                                                                                                             cAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATg                                                                                                                          >  2:702350/1‑194 (MQ=255)
                                                                                                                                                                  cACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGAcgcg                                                                        <  1:1246015/239‑1 (MQ=255)
                                                                                                                                                                     tCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGata                                                                     >  1:501868/1‑239 (MQ=255)
                                                                                                                                                                          aGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGAt                                                                >  2:721596/1‑239 (MQ=255)
                                                                                                                                                                            tCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATaa                                                              >  2:247462/1‑239 (MQ=255)
                                                                                                                                                                                      ccAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTgccgcc                                                    >  2:888774/1‑239 (MQ=255)
                                                                                                                                                                                        aGCTGGAATGCGGTCGAGCATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGCTCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCAt                                                  >  1:916236/1‑239 (MQ=255)
                                                                                                                                                                                             gAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGcc                                              <  1:247462/238‑1 (MQ=255)
                                                                                                                                                                                                tGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTgc                                          <  1:1742728/239‑1 (MQ=255)
                                                                                                                                                                                                    gTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATc                                                                                                   <  1:273524/178‑1 (MQ=255)
                                                                                                                                                                                                    gTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATc                                                                                                   >  2:273524/1‑178 (MQ=255)
                                                                                                                                                                                                      cGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATa                                    <  1:581728/239‑1 (MQ=255)
                                                                                                                                                                                                               ccGCGCTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTAGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATAGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATAAAGTGTTTc                           >  2:1056428/1‑239 (MQ=255)
                                                                                                                                                                                                                   gcTACGTTGTTCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATAAAGTGTTTcgccg                       <  1:1944306/239‑1 (MQ=255)
                                                                                                                                                                                                                           gttCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATAAAGTGTTTCGCCGCTGCCTga               <  1:1081752/239‑1 (MQ=255)
                                                                                                                                                                                                                             tCATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATAAAGTGTTTCGCCGCTGCCTgag              >  1:1376298/1‑238 (MQ=255)
                                                                                                                                                                                                                              cATCTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATAAAGTGTTTCGCCGCTGCCTGAGAc            <  1:721596/239‑1 (MQ=255)
                                                                                                                                                                                                                                 cTGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATAAAGTGTTTCGCCGCTGCCTGAGAc            >  1:148794/1‑236 (MQ=255)
                                                                                                                                                                                                                                  tGCCCGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATAAAGTGTTTCGCCGCTGCCTGAGACATga        <  2:1911978/239‑1 (MQ=255)
                                                                                                                                                                                                                                    cccGTAGCTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATAAAGTGTTTCGCCGCTGCCTGAGACATgaag      >  1:45236/1‑239 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                           
ATTATGATGATCTACAGGTATAAAAAACCCTGCCATGCGGCAGGGTCATAAAAGTAAGAAGAATGAATTAACGCGCCAGCCAACCGCCATCCACGGCAATGGTATAACCATTCACATAATCTGAAGCGCTGGAGGCAAGGAACACTATCGGCCCCATCAGGTCACTCGGCAGTCCCCAACGACCAGCTGGAATGCGGTCGAGAATTTCCGCGCTACGTTGTTCATCTGCCCGTAGTTGTTGAGTATTGTTGGTCGCCATGTAACCCGGGGCTATCGCATTAACATTAATGTTGTGTTTAGCCCATTCGTTCGCCATCAATCGCGTCACACCCATCACGCCGCTTTTTGATGCGGTATAAGAAGGCACACGGATCCCGCCCTGGAAGGAGAGCATTGACGCGATATTGATAATCTTGCCGCCATTGCCTTGCGCGATAAAGTGTTTCGCCGCTGCCTGAGACATGAAGAATA  >  NC_007779/2981086‑2981556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A