Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F167 I0 R1	92	168.4	4253790	89.4%	3802888	202.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_007779	2,911,891	T→G	100%	L139F (TTA→TTC)	Y75_RS14515 ←	GTP pyrophosphokinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_007779	2,911,891	0	T	G	100.0%	448.5 / ‑6.7	128	L139F (TTA→TTC)	Y75_RS14515	GTP pyrophosphokinase
Reads supporting (aligned to +/- strand): ref base T (0/1); major base G (80/46); minor base A (0/1); total (80/48)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 128 total aligned reads displayed.

GCAGTTTGGCAATTCGTTTGTATTCGGTTGGATGGAGGTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAATAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACC  >  NC_007779/2911656‑2912122

gcagTTTGGCAATTCGTTTGTATTCGGTTGGATGGAGGTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAAc                                                                                                                                                                                                                                        >  1:523861/1‑239 (MQ=255)

      tGGCAATTCGTTTGTATTCGGTTGGATGGAGGTAACGGAAGCAGTAATCTTACAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCg                                                                                                                                                                                                                                   >  2:258854/1‑238 (MQ=255)

          aaTTCGTTTGTATTCGGTTGGATGGAGGTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑Gaa                                                                                                                                                                                                                             <  1:1945223/239‑1 (MQ=255)

                     agccGGTTGGATGGAGGTAACGGAAGCATGAATCTTCCAGTTCCCATTTCAGTTGTCCGTTTCCGAGCCGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGAc                                                                                                                                                                                                                   <  2:208848/235‑1 (MQ=255)

                         ggTTGGATGGAGGTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGt                                                                                                                                                                                                               >  1:1861261/1‑238 (MQ=255)

                           ttGGATGGAGGTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGAc                                                                                                                                                                                                                   >  2:886959/1‑232 (MQ=255)

                           ttGGATGGAGGTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGAc                                                                                                                                                                                                                   <  1:886959/232‑1 (MQ=255)

                           ttGGATGGAGGTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTGTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGAc                                                                                                                                                                                                                   <  1:1741812/232‑1 (MQ=255)

                               atggaGGTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCggag                                                                                                                                                                                                         <  1:906122/238‑1 (MQ=255)

                                   aGGTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAAc                                                                                                                                                                                                    >  1:65305/1‑239 (MQ=255)

                                     gTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCggag                                                                                                                                                                                                         >  1:208848/1‑232 (MQ=255)

                                     gTAACGGAAACAGTAATCTTCCAGATCCCATTTCAGTTGTCCGACTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACAATCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAACA‑T‑CATCGACCACCGCCAAGCACATCCGGC‑GAACGATATCGACCTGTACGGAGGAAACAg                                                                                                                                                                                                  >  2:1080275/1‑239 (MQ=255)

                                           taggaactAATCTTCAGGTTCCGCGTTCGGTTTCCCGATTCGGAGACGGTTAGCCGGCGGTGAGTGGATGTTGGTGCGCCTTTTTGCCGCCAGTACACGTTCAGCTTCCTGCGCATCTTTTTCTTCGCGCAGATGTGCAATACGCTCCGGGAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCAGCGCCAAGAACATGCGGC‑GAACGTTATCGACCTGTTCGTAGGGAACAGAATCa                                                                                                                                                                                             <  2:1537696/231‑1 (MQ=255)

                                               cAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAgtgt                                                                                                                                                                                         >  1:264253/1‑238 (MQ=255)

                                                         ccAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTc                                                                                                                                                                             >  1:699983/1‑239 (MQ=255)

                                                         ccAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTc                                                                                                                                                                             >  1:1565754/1‑239 (MQ=255)

                                                            gTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGAc                                                                                                                                                                                                                   >  2:901025/1‑199 (MQ=255)

                                                               cccATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTCCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTg                                                                                                                                                                        >  1:766878/1‑238 (MQ=255)

                                                                 cATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCg                                                                                                                                                                     >  1:229152/1‑239 (MQ=255)

                                                                            tCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCgccgcc                                                                                                                                                           >  2:1841222/1‑238 (MQ=255)

                                                                                         cGGTTAGCCAGGGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCacgcacgc                                                                                                                                              <  1:1447614/238‑1 (MQ=255)

                                                                                          ggTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCg                                                                                                                                            >  1:1023225/1‑239 (MQ=255)

                                                                                              aGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGACAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATAAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCAAGCCCGCCGGGac                                                                                                                                        >  2:1383778/1‑238 (MQ=255)

                                                                                                    cGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGt                                                                                                                                  >  1:1525192/1‑239 (MQ=255)

                                                                                                     ggTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGtt                                                                                                                                 >  1:562752/1‑239 (MQ=255)

                                                                                                            agttGTTGGACCACTTTTTGCCCGCCGGTCCCCGTTCTGTTCCCGGGGCATCTTTTACTGCGCACAAATGAGCAAACCGCCCCGCCATTTTGAGGACGACGCAGCGAAAA‑T‑CATCGCCAATCGCCAAGAGCATCCGGC‑GACCGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGGGGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAAcgac                                                                                                                           <  2:1732874/235‑1 (MQ=255)

                                                                                                                 ttGTTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGtt                                                                                                                                                                                                                         <  2:955370/140‑1 (MQ=255)

                                                                                                                 ttGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAgt                                                                                                                                                                                           >  2:307463/1‑170 (MQ=255)

                                                                                                                 ttGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAgt                                                                                                                                                                                           <  1:307463/170‑1 (MQ=255)

                                                                                                                 ttGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACtt                                                                                                                     >  1:1035190/1‑239 (MQ=255)

                                                                                                                 ttGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACtt                                                                                                                     >  1:2092358/1‑239 (MQ=255)

                                                                                                                   ggTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTa                                                                                                                    >  1:1460232/1‑238 (MQ=255)

                                                                                                                   ggTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTa                                                                                                                    >  1:927900/1‑238 (MQ=255)

                                                                                                                     tacatgctTTTGCCGCCAGTACACGTTCATCTTCCGGCGCTTCTTTTACTTCGCGCAGATGAGCAAAACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACAATCGCCAAGAACATCCGGC‑AAACTTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATcgccg                                                                                                                                                             <  1:104572/189‑1 (MQ=255)

                                                                                                                      accttctactGCCCCCAGTCCCTGTCCACCTTCCGGCGCATTTTTTACTCCGCGCGGATGAGAAATACCCCCCGCCATTTTGATGCCGTCGCAGGAAAAA‑C‑CATGAACCTACGCAAAGACCACCGGGG‑GAAGTTTAGCGCGCTGTTGGGAGGAAACAAAAACAGTG‑GCGTTCGCTTCAGGCGGGGGGACCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGa                                                                                                                <  2:237400/230‑1 (MQ=255)

                                                                                                                      accctctTTGGCCGCCAGTACACGTCCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGCCCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGa                                                                                                                <  1:612431/236‑1 (MQ=255)

                                                                                                                      acacTCTTTGGCCGCCAGTCCACGTTCATCTTCCGGCGCATCTTTTACTCCGCGCAGATGAGCAATACGCCCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGa                                                                                                                <  1:393812/239‑1 (MQ=255)

                                                                                                                          tctTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCCTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGc                                                                                                             >  1:1343515/1‑238 (MQ=255)

                                                                                                                           ctTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGc                                                                                                             >  1:1363852/1‑237 (MQ=255)

                                                                                                                            ttttGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGctc                                                                                                           >  1:237400/1‑238 (MQ=255)

                                                                                                                            ttttGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGctc                                                                                                           >  1:715113/1‑238 (MQ=255)

                                                                                                                             tttGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATcacgca                                                                                                                                                 >  1:279265/1‑199 (MQ=255)

                                                                                                                              gtcgcacgaGTCCACTTTCTTCTCCCGCCGTTTTTTTCTCTCCGAGCAGTTAACCAATTCTCTCCGCCAGTTTGCTGCCTGCGCAG‑GAAAA‑TCCATCGCCCCTCGCCAAGAACCTGCGGC‑GACTGTTACCGCCCTGTTCGGAAAAAAAAAATCCCGTGGGCG‑TCTTTTGCACCTGGCGAGTCCCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGctctaa                                                                                                        <  2:562752/231‑3 (MQ=255)

                                                                                                                                 ccgacAGTACACTTTCATCTTCGGGCGCTTCTTTTACTTCGCGCAAAGGTGAATGACGCTCCCCCGTTTTGAATACTCCGCAGCGAAAA‑T‑CAGCGACCATCGCCAAGAACATCCGGG‑GAACTTTATCGACCTGTTCGGAGGAAACAGAACAAGTGTGCG‑TCTCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACg                                                                                                      <  2:1992146/238‑1 (MQ=255)

                                                                                                                                    ccAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCg                                                                                                                                                                                      <  1:1003930/156‑1 (MQ=255)

                                                                                                                                    ccAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCg                                                                                                                                                                                      >  2:1003930/1‑156 (MQ=255)

                                                                                                                                    ccAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACgcagc                                                                                                  >  1:970161/1‑239 (MQ=255)

                                                                                                                                      aGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATACCAAGCACGCCGTGAACAAGGTTAACGACCGACTTACCGACCCTCTCACGACGcac                                                                                                >  2:460155/1‑239 (MQ=255)

                                                                                                                                        tACACTTCCATCTGCCGGCGCCTTTTTTCCCCCGCGCAGATGAGCAACACGCTCGGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GACCGTTACCGACCTGTTCGGAGGAAACAGAATCAGTGGGCG‑TCGCTTTCAGCTGGCGGATGGCCGCCATATcacgca                                                                                                                                                 <  2:62558/188‑1 (MQ=255)

                                                                                                                                        tACACGTGCATCTTCCGGCGCATCTTTTACTGCGCGAAGATGAGCAATCCGCTCCGCCAGTTTGATGACTCCGCAGCGAAAA‑T‑CATCGCCCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGAAAACAGAATCAGTGTGCG‑TCGTTTTCAGCTGGCGGATCGCCGCCATATCACGCACGcc                                                                                                                                             <  2:1579023/192‑1 (MQ=255)

                                                                                                                                            cGTTCCTCTTCCGGCGCATCTTTGACTGCCCGAAGATGAGCAATCCCCTCCGCCAGTTGGACGCCTACGCAGCAAAAA‑C‑TCTCGACCATCGCAAATACCACCGGGC‑GAACGTTACCGCCCTGTTCGGCGGAAACAGAATCCGTGTGCT‑TCTCTTTAAGCGGGGGGTCCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCt                                                                                            <  2:1337257/237‑1 (MQ=255)

                                                                                                                                               tCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTc                                                                                          >  1:1809384/1‑236 (MQ=255)

                                                                                                                                                cATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGcc                                                                                                                                             >  1:1709110/1‑184 (MQ=255)

                                                                                                                                                  tCTTCCGGGGCATCTTTTACTTCGCGCATATGGGCAATACGCTCCGCCAGGTTGATGACTACGCAGCGAAAA‑T‑CAGCGACCATCGCCAAGGACATTCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTGTCAGCTGGCGAATCGCCGTCCTAACACGCACTCCGTGAATAAGGTTAACGACTGACTTACTGGCCCTCTCACGCATCACATCCTCGCTg                                                                                      >  2:562818/1‑237 (MQ=255)

                                                                                                                                                         gcgcATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTg                                                                                      >  1:597260/1‑230 (MQ=255)

                                                                                                                                                          acattCTTTTGCTCCGCGCAGATGAGCAATCCGCCGCGCCAGTTTGAGGACAACGCAGCAAAAT‑T‑AATCGACAACCGCCAAGAACCTCCGGC‑GAACGTTATCGACCTGTTCGGGGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTg                                                                             <  2:939719/234‑1 (MQ=255)

                                                                                                                                                                       tCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAgg                                                                                                                                   >  1:451022/1‑171 (MQ=255)

                                                                                                                                                                        cgcgCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACg                                                                                                      <  1:1111484/199‑1 (MQ=255)

                                                                                                                                                                        cgcgCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACg                                                                                                      >  2:1111484/1‑199 (MQ=255)

                                                                                                                                                                         gcgcAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCa                                                                   >  1:939719/1‑233 (MQ=255)

                                                                                                                                                                         gcgcAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGa                                                             >  1:498488/1‑239 (MQ=255)

                                                                                                                                                                          cgcAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCAAGAGGGaa                                                            >  2:1503891/1‑239 (MQ=255)

                                                                                                                                                                             agagGAGAAACACGCCCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CACCGACCATCGCCAAGAACATCCGGC‑GAACTTTAGCGACCTGTTCGGAGAAAAAAGAATCAGTGTGCG‑TCGTTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGaa                                                                                                                                        <  2:230426/160‑1 (MQ=255)

                                                                                                                                                                                   gCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGCCCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAgcg                                                    <  1:11514/238‑1 (MQ=255)

                                                                                                                                                                                       tACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACAt                                                                                                                                                                                                                                      <  1:1779024/58‑1 (MQ=255)

                                                                                                                                                                                       tACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAAc                                                                                                                              >  1:230426/1‑160 (MQ=255)

                                                                                                                                                                                       tACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGcgccgc                                                >  1:1277844/1‑238 (MQ=255)

                                                                                                                                                                                         cGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCggag                                                                                                                                                                                                         <  2:779058/84‑1 (MQ=255)

                                                                                                                                                                                         cGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGCGGAAACAGAATCAGCGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCt                                                                                       >  2:1764409/1‑197 (MQ=255)

                                                                                                                                                                                         cGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGccgccc                                              >  1:1955668/1‑238 (MQ=255)

                                                                                                                                                                                         cGCTCCGCCAGTTTGATGACTAAGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACAt                                                                                              >  1:1164466/1‑190 (MQ=255)

                                                                                                                                                                                            tCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAAAAGAATCAGTGTGCT‑TCGCTTTCAGCTGGCGGATCGCCGCCACCTCCCGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCTCCACATCTTCGCCGAATACTTTGGCATCCGCCAGTGGGTAAATCAACgccgccggat                                           >  2:295441/1‑234 (MQ=255)

                                                                                                                                                                                                 gattttGATGCCACCGCACGGAAAA‑T‑CATCGACCACAGCCAAGAACGCCCGGC‑AAACGTTATCGACCTGTCCGGAGGAAACAGAATCAGGGGGGT‑TCGTTTTCAGCGGGCGGACCCCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCg                                        <  2:927900/233‑1 (MQ=255)

                                                                                                                                                                                                    tttGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCaa                                  >  1:1762745/1‑239 (MQ=255)

                                                                                                                                                                                                        atgaCTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGc                                                                           >  1:1498709/1‑194 (MQ=255)

                                                                                                                                                                                                        atgaCTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGt                               >  2:563529/1‑238 (MQ=255)

                                                                                                                                                                                                        atgaCTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGt                               >  1:446061/1‑238 (MQ=255)

                                                                                                                                                                                                        atgaCTACGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGCTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGCGGGAAAAGCAGCGCCGCCCGCAGCGTGTCCATGt                               >  2:1320180/1‑238 (MQ=255)

                                                                                                                                                                                                              acccAGGGAAAA‑T‑CAGCGACAAACGCAAAGAACGTCGGCG‑GAATGTTATCGCGCTGGTCGGAGAAAACAGAATCGTTGGGGG‑GCCTTTTAAGCGGGCGAATGGCCGCCATATCCCGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACt                        <  2:1460232/236‑1 (MQ=255)

                                                                                                                                                                                                              aCGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACt                        >  1:1178251/1‑239 (MQ=255)

                                                                                                                                                                                                              aCGCAGCAAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACt                        <  1:801016/239‑1 (MQ=255)

                                                                                                                                                                                                               cGCAGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAAt                                                                                                                                       >  1:609455/1‑127 (MQ=255)

                                                                                                                                                                                                                 ctgCGAAAACT‑CACCGACCATCGCGAAGACCA‑CCGGCGGACCGTTTTCGCCCAGTTGGGAGGAACCAGATTCAGTGTGTG‑TCGCTTCCACCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACtt                       <  2:2019005/236‑1 (MQ=255)

                                                                                                                                                                                                                  aGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCCGAGGGAAAAGCAGCGCCGCACGCAGCGGGTCAATGTCCTAACTTAAt                    >  2:1034112/1‑239 (MQ=255)

                                                                                                                                                                                                                  aGCGAAAA‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAgcg                                                    >  2:1296828/1‑207 (MQ=255)

                                                                                                                                                                                                                        aa‑T‑CATCGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAACCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCgag              <  1:806983/239‑1 (MQ=255)

                                                                                                                                                                                                                         a‑t‑catcGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCgaga             >  1:1564953/1‑239 (MQ=255)

                                                                                                                                                                                                                         a‑t‑caccGACCATCGCCAAGAACATCCGGC‑GAACGTTACCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCgaga             <  1:1383778/239‑1 (MQ=255)

                                                                                                                                                                                                                                cGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGc                                                                           >  1:828046/1‑172 (MQ=255)

                                                                                                                                                                                                                                cGACCATCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCTGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGa          >  1:1448497/1‑237 (MQ=255)

                                                                                                                                                                                                                                     aTCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTccac   <  1:1841222/239‑1 (MQ=255)

                                                                                                                                                                                                                                     aTCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTccac   <  1:493700/239‑1 (MQ=255)

                                                                                                                                                                                                                                     aTCGCCAAGAACATCCGGC‑AAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTCCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTccac   <  1:136072/239‑1 (MQ=255)

                                                                                                                                                                                                                                      tCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCa                                                                                                        >  2:1024387/1‑137 (MQ=255)

                                                                                                                                                                                                                                      tCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCa                                                                                                        <  1:1024387/137‑1 (MQ=255)

                                                                                                                                                                                                                                      tCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCt                                                                                       >  2:1138350/1‑154 (MQ=255)

                                                                                                                                                                                                                                      tCGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTccacc  >  2:1170646/1‑239 (MQ=255)

                                                                                                                                                                                                                                      tCGCAAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCt                                                                                       <  1:1138350/154‑1 (MQ=255)

                                                                                                                                                                                                                                       cGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTTGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGtt                                                                                                                                 >  2:430083/1‑111 (MQ=255)

                                                                                                                                                                                                                                       cGCCAAGAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGtt                                                                                                                                 <  1:430083/111‑1 (MQ=255)

GCAGTTTGGCAATTCGTTTGTATTCGGTTGGATGGAGGTAACGGAAGCAGTAATCTTCCAGTTCCCATTTCAGTTGTCCGATTCCGAGACGGTTAGCCAGCGGTGCGTAGATGTTGGTACACTCTTTTGCCGCCAGTACACGTTCATCTTCCGGCGCATCTTTTACTTCGCGCAGATGAGCAATACGCTCCGCCAGTTTGATGACTACGCAGCGAAAA‑T‑CATCGACCATCGCCAATAACATCCGGC‑GAACGTTATCGACCTGTTCGGAGGAAACAGAATCAGTGTGCG‑TCGCTTTCAGCTGGCGGATCGCCGCCATATCACGCACGCCGTGAATAAGGTTAACGACCGACTTACCGACGCTCTCACGCAGCACATCTTCGCTGACTACGTTGGCATCCGCCAGAGGGAAAAGCAGCGCCGCCCGCAGCGTGTCAATGTCCATACTTAATGTCGAGAGGATCTCCACC  >  NC_007779/2911656‑2912122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A