Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I2 R1
|
766 |
64.2 |
3232166 |
90.9% |
2938038 |
104.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,090,138 |
+C |
coding (384/498 nt) |
yggI → |
Zn‑dependent metalloprotease‑related protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,090,134 | 1 | . | C | 100.0%
| 165.0
/ NA
| 47 | F127S (TTC→TCC) | yggI | Zn‑dependent metalloprotease‑related protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (23/24); total (23/24) |
ACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTT‑CCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTG > NC_000913/3089997‑3090259
|
acaTTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTT‑c > 1:1018291/1‑139 (MQ=255)
tGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTT‑ccccct < 1:426912/139‑3 (MQ=255)
tGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGCAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGcgtc < 1:967026/139‑4 (MQ=255)
ggAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTg < 1:1185378/137‑1 (MQ=255)
ggAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCa < 2:284315/139‑1 (MQ=255)
ggAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACCCCTCAGTTCGAACTGCAATCCGTGCGTCGCCACACCTTCCCCCTACCGCTg > 2:1185378/1‑137 (MQ=255)
aTTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGcc > 2:257382/1‑139 (MQ=255)
aTTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACACATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGcc > 2:808291/1‑139 (MQ=255)
tttCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCa > 1:818403/1‑139 (MQ=255)
tCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCa < 2:1456578/130‑1 (MQ=255)
tCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCa > 1:1456578/1‑130 (MQ=255)
ggCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAg < 2:1139605/139‑1 (MQ=255)
ggCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAg < 2:1018291/139‑1 (MQ=255)
cacaTGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCATCACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCg < 1:931393/139‑1 (MQ=255)
caTGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGACCTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATTAGCTTACCGTa < 1:257382/139‑1 (MQ=255)
aTGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTAc < 1:524572/139‑1 (MQ=255)
agagTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTC‑cccc < 1:230270/94‑1 (MQ=255)
agagTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTC‑cccc > 2:230270/1‑94 (MQ=255)
gtggaagtggaTGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATc > 1:1552476/1‑117 (MQ=255)
gtggaagtggaTGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATc < 2:1552476/117‑1 (MQ=255)
tggaagtggaTGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAAt > 2:1059599/1‑139 (MQ=255)
gaagtggaTGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATcg > 2:929806/1‑139 (MQ=255)
aagtggaTGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATcgc > 1:741234/1‑139 (MQ=255)
aagtggaTGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACACATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATcgc < 1:808291/139‑1 (MQ=255)
tgGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACATCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTg > 1:886066/1‑139 (MQ=255)
tgGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTg > 1:149039/1‑139 (MQ=255)
aCGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAgg < 2:741234/139‑1 (MQ=255)
gCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGt > 1:1488484/1‑139 (MQ=255)
gCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGt > 1:644836/1‑139 (MQ=255)
cTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTc < 2:1488484/139‑1 (MQ=255)
ggTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTAt < 2:644836/139‑1 (MQ=255)
tgtTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTT‑cccc > 2:627458/1‑61 (MQ=255)
tgtTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTT‑cccc < 1:627458/61‑1 (MQ=255)
ttCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCt > 1:1219290/1‑139 (MQ=255)
gtcgtACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACt < 1:1386670/139‑1 (MQ=255)
gtcgtACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACt < 2:149039/139‑1 (MQ=255)
tcgtACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTAc > 1:1001323/1‑87 (MQ=255)
tcgtACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTAc < 2:1001323/87‑1 (MQ=255)
tcgtACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTg > 1:701260/1‑139 (MQ=255)
tcgtACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTg > 1:551316/1‑139 (MQ=255)
cgtACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGcc > 2:507153/1‑65 (MQ=255)
cgtACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGcc < 1:507153/65‑1 (MQ=255)
gtACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCg < 1:620747/139‑1 (MQ=255)
aGTTCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGc < 2:127556/139‑1 (MQ=255)
ttCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTg > 1:1362170/1‑139 (MQ=255)
ttCGAACTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTg > 2:896880/1‑139 (MQ=255)
aCTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAgg < 2:1348453/99‑1 (MQ=255)
aCTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAgg > 1:1348453/1‑99 (MQ=255)
aCTGCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGc > 2:827326/1‑139 (MQ=255)
gCAATCCGTGCGTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGaa < 1:1297238/139‑1 (MQ=255)
gTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACt > 2:427902/1‑106 (MQ=255)
gTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACt < 1:427902/106‑1 (MQ=255)
gTCGCAACACCTTCCCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTg < 2:1362170/139‑1 (MQ=255)
|
ACATTTGCTGGTATGGAAACATTTCGGCCGCGTAGCGCCACATGGCAAAGAGTGGAAGTGGATGATGGAAAACGTGCTGGGTGTTCCCGCCCGTCGTACGCATCAGTTCGAACTGCAATCCGTGCGTCGCAACACCTT‑CCCCTACCGCTGCAAGTGCCAGGAGCATCAGCTTACCGTACGCCGCCATAATCGCGTAGTTCGTGGCGAGGCCGTCTATCGCTGTGTTCACTGCGGTGAACAGCTGGTTGCGAAATAACCATCTG > NC_000913/3089997‑3090259
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
