Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I2 R1
|
766 |
64.2 |
3232166 |
90.9% |
2938038 |
104.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,895,071 |
G→A |
M140I (ATG→ATA) |
chrR → |
chromate reductase, Class I, flavoprotein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,895,071 | 0 | G | A | 100.0%
| 140.2
/ NA
| 44 | M140I (ATG→ATA) | chrR | chromate reductase, Class I, flavoprotein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (21/23); total (21/23) |
TCCCGCCTGCCGGATCAACCGCTGGCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATGGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGA > NC_000913/3894946‑3895206
|
tCCCGCCTGCCGGATCAACCGCTGGCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCATTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGCGATGAACACGc < 1:932962/139‑1 (MQ=255)
gATCAACCGCTGGCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATgg > 1:686989/1‑139 (MQ=255)
aaCCGCTGGCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACATGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGggcgg > 1:1025648/1‑139 (MQ=255)
aCCGCTGGCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGggcggc > 1:590560/1‑139 (MQ=255)
ggCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGAtt < 2:686989/139‑1 (MQ=255)
gCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTc > 2:1599394/1‑139 (MQ=255)
tAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAAc > 1:549015/1‑139 (MQ=255)
gATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCg < 2:549015/139‑1 (MQ=255)
aTTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGc > 1:784289/1‑139 (MQ=255)
ttCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCa < 2:590560/139‑1 (MQ=255)
gACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAAcc > 2:1595575/1‑139 (MQ=255)
aCCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCg < 1:1595575/139‑1 (MQ=255)
cTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGaa > 1:518097/1‑139 (MQ=255)
tCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAg < 1:1353133/139‑1 (MQ=255)
tGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGtgat > 1:1514614/1‑139 (MQ=255)
gggCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGtgatt < 1:141464/139‑1 (MQ=255)
cGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGtgattgat < 1:1412050/139‑1 (MQ=255)
gTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCg < 1:68721/124‑1 (MQ=255)
gTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCg > 2:68721/1‑124 (MQ=255)
tGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGgcggcg < 1:121331/93‑1 (MQ=255)
tGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGgcggcg > 2:121331/1‑93 (MQ=255)
aTTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAgg < 1:79675/139‑1 (MQ=255)
cgcgcTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGtg > 2:1147618/1‑53 (MQ=255)
cgcgcTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGtg < 1:1147618/53‑1 (MQ=255)
cgcgcTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGa > 2:520830/1‑139 (MQ=255)
cTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGaa > 1:201974/1‑74 (MQ=255)
cTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGaa < 2:201974/74‑1 (MQ=255)
cTGCGCCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAAt > 2:961751/1‑139 (MQ=255)
gcgtcAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTg > 2:276356/5‑139 (MQ=255)
gcgcCAGATTTTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCg > 2:1151242/1‑85 (MQ=255)
gcgcCAGATTTTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCg < 1:1151242/85‑1 (MQ=255)
gcgcCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGaa < 2:921920/72‑1 (MQ=255)
gcgcCAGATTCTGGTTTACCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGaa > 1:921920/1‑72 (MQ=255)
cgcCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGaa < 2:97669/71‑1 (MQ=255)
cgcCAGATTCTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGaa > 1:97669/1‑71 (MQ=255)
cTGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTg < 1:520830/139‑1 (MQ=255)
tGGTTTTCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTgg < 2:784289/139‑1 (MQ=255)
tCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGgag > 1:943921/1‑78 (MQ=255)
tCCTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGgag < 2:943921/78‑1 (MQ=255)
ccTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGtg > 2:89614/1‑82 (MQ=255)
ccTCGATGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGtg < 1:89614/82‑1 (MQ=255)
aTGCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCa < 2:919459/139‑1 (MQ=255)
gCAATAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGc < 2:518097/139‑1 (MQ=255)
aaTAGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGa < 2:1514614/139‑1 (MQ=255)
|
TCCCGCCTGCCGGATCAACCGCTGGCCGGTAAACCGGTATTGATTCAGACCAGCTCAATGGGCGTGATTGGCGGCGCGCGCTGTCAGTATCACCTGCGCCAGATTCTGGTTTTCCTCGATGCAATGGTGATGAACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGA > NC_000913/3894946‑3895206
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
