Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F1 I1 R1	770	51.4	2439994	93.8%	2288714	110.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,719,768	G→A	97 (TAG→TAA)	yiaG →	HTH_CROC1 family putative transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,719,768	0	G	A	100.0%	337.9 / NA	103	97 (TAG→TAA)	yiaG	HTH_CROC1 family putative transcriptional regulator
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (50/53); total (50/53)

Only 100 of 103 total aligned reads displayed.

GGGTTTTGGGCGTATCAGTCGCCATGGTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAGACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTA  >  NC_000913/3719638‑3719902

 ggTTTTGGGCGTATCAGTCGCCATGGTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATc                                                                                                                               <  1:23501/139‑1 (MQ=255)

        ggCGTATCAGTCGCCATGGTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTa                                                                                                                        <  1:262429/139‑1 (MQ=255)

            tATCAGTCGCCATGGTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGc                                                                                                                    >  1:1141981/1‑139 (MQ=255)

                  tCGCCATGGTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              <  2:1141981/139‑1 (MQ=255)

                  tCGCCATGGTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              <  2:405548/139‑1 (MQ=255)

                  tCGCCATGGTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              <  2:393626/139‑1 (MQ=255)

                    gCCATGGTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACg                                                                                                            <  2:90518/139‑1 (MQ=255)

                       aTGGTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTc                                                                                                         >  2:340390/1‑139 (MQ=255)

                         ggTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGTCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCt                                                                                                       <  1:351590/139‑1 (MQ=255)

                         ggTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTCATTGCTGTTTACGGTCCt                                                                                                       <  2:714916/139‑1 (MQ=255)

                                gAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACa                                                                                                >  1:1179936/1‑139 (MQ=255)

                                   tGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTa                                                                                                                                 >  1:508511/1‑103 (MQ=255)

                                   tGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTa                                                                                                                                 <  2:508511/103‑1 (MQ=255)

                                   tGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              >  2:139425/1‑122 (MQ=255)

                                   tGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              <  1:139425/122‑1 (MQ=255)

                                   tGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACg                                                                                                            >  2:619143/1‑124 (MQ=255)

                                   tGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACg                                                                                                            <  1:619143/124‑1 (MQ=255)

                                   tGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGa                                                                                             >  2:1205217/1‑139 (MQ=255)

                                   tGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGa                                                                                             >  2:721264/1‑139 (MQ=255)

                                   tGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGa                                                                                             >  1:626291/1‑139 (MQ=255)

                                   tGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGG‑ATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGAc                                                                                            >  1:1144686/1‑139 (MQ=255)

                                   tGGAAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAGGTAAGCAGTTGATGGAAGAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGa                                                                                             >  1:784196/1‑139 (MQ=255)

                                    gggAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACtt                                                                                                                                    >  2:1168964/1‑99 (MQ=255)

                                    gggAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCa                                                                                                                             <  1:149747/106‑1 (MQ=255)

                                    gggAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCa                                                                                                                             >  2:149747/1‑106 (MQ=255)

                                    gggAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACg                                                                                                            <  2:703295/123‑1 (MQ=255)

                                    gggAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTc                                                                                                         <  2:13947/126‑1 (MQ=255)

                                    gggAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTc                                                                                                         >  1:13947/1‑126 (MQ=255)

                                    gggAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGAc                                                                                            >  1:857129/1‑139 (MQ=255)

                                    gggAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGAc                                                                                            >  1:103786/1‑139 (MQ=255)

                                    gggAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGAc                                                                                            <  2:1179936/139‑1 (MQ=255)

                                    gggAATCCAGACGCGTGAAGCCTTCAAGTACCGAACTAAAATTGAGGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTAGTGCTGTTTACg                                                                                                            >  1:703295/1‑123 (MQ=255)

                                        aTCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGtt                                                                                        <  1:1205217/139‑1 (MQ=255)

                                          ccAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGtgtt                                                                                      >  1:217048/1‑139 (MQ=255)

                                              aCGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCaa                                                                                  >  2:407147/1‑139 (MQ=255)

                                                gcgTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTg                                                                                                                     >  2:199669/1‑102 (MQ=255)

                                                gcgTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTg                                                                                                                     <  1:199669/102‑1 (MQ=255)

                                                  gTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGa                                                                              <  2:626291/139‑1 (MQ=255)

                                                   tGAAGCCTTCAAGTGCCGAACTAAAATTGATGCGGTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGa                                                                              <  1:753621/139‑1 (MQ=255)

                                                   tGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTc                                                                                                         <  1:496953/111‑1 (MQ=255)

                                                   tGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTc                                                                                                         >  2:496953/1‑111 (MQ=255)

                                                   tGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGAt                                                                             <  2:857129/139‑1 (MQ=255)

                                                    gAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGAtt                                                                            <  1:407147/139‑1 (MQ=255)

                                                          ttCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCaa                                                                                  <  2:1060413/127‑1 (MQ=255)

                                                          ttCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCaa                                                                                  >  1:1060413/1‑127 (MQ=255)

                                                          ttCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCAt                                                                      >  1:1112504/1‑139 (MQ=255)

                                                          ttCAAGTGCCGAACTAAAATTAATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTAGTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCAt                                                                      >  1:733424/1‑139 (MQ=255)

                                                            cAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCa                                                                                                                             <  2:883240/82‑1 (MQ=255)

                                                            cAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCa                                                                                                                             >  1:883240/1‑82 (MQ=255)

                                                            cAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAg                                                                                               >  1:201005/1‑112 (MQ=255)

                                                             aaGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATaaa                                                                   >  2:833565/1‑139 (MQ=255)

                                                              aGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAat                                                                  <  2:530012/139‑1 (MQ=255)

                                                               gTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAata                                                                 <  1:1152219/139‑1 (MQ=255)

                                                                tGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAatat                                                                <  2:103786/139‑1 (MQ=255)

                                                                  ccGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGa                                                              <  2:315253/139‑1 (MQ=255)

                                                                  ccGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGa                                                              <  2:1112504/139‑1 (MQ=255)

                                                                       cTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAaat                                                         <  1:904675/139‑1 (MQ=255)

                                                                          aaaTTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTCTCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAaataat                                                      <  2:733424/139‑1 (MQ=255)

                                                                          aaaTTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAaataat                                                      <  1:164946/139‑1 (MQ=255)

                                                                               gATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAAttgttg                                                 >  1:1148498/1‑139 (MQ=255)

                                                                                aTGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAg                                                                                               <  2:1154262/92‑1 (MQ=255)

                                                                                aTGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAg                                                                                               >  1:1154262/1‑92 (MQ=255)

                                                                                aTGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGc                                                >  1:382393/1‑139 (MQ=255)

                                                                                  gC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              <  1:122727/75‑1 (MQ=255)

                                                                                  gC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              >  2:122727/1‑75 (MQ=255)

                                                                                     gTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCa                                            <  2:382393/139‑1 (MQ=255)

                                                                                               aGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATg                                  >  1:624078/1‑139 (MQ=255)

                                                                                                gCCAACCCGGCATTAAGTAAGCAGTTGATGG‑ATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCg                                <  2:1144686/139‑1 (MQ=255)

                                                                                                 ccAACCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCg                                <  2:476431/139‑1 (MQ=255)

                                                                                                    aCCCGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTgg                             >  1:835867/1‑139 (MQ=255)

                                                                                                     cccGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              <  2:798381/57‑1 (MQ=255)

                                                                                                     cccGGCATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              >  1:798381/1‑57 (MQ=255)

                                                                                                          cATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCa                                                                                                                             <  2:405994/37‑1 (MQ=255)

                                                                                                          cATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCa                                                                                                                             >  1:405994/1‑37 (MQ=255)

                                                                                                          cATTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAAt                       >  1:129490/1‑139 (MQ=255)

                                                                                                           aTTAAGTAAGCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATg                      <  2:256137/139‑1 (MQ=255)

                                                                                                               agtaagCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              <  2:256268/47‑1 (MQ=255)

                                                                                                               agtaagCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              >  1:256268/1‑47 (MQ=255)

                                                                                                                   agCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACg                                                                                                            <  1:50960/45‑1 (MQ=255)

                                                                                                                   agCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACg                                                                                                            >  2:50960/1‑45 (MQ=255)

                                                                                                                    gCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACa                                                                                                >  1:610275/1‑56 (MQ=255)

                                                                                                                    gCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACa                                                                                                <  2:610275/56‑1 (MQ=255)

                                                                                                                    gCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGca                    >  1:418167/1‑132 (MQ=255)

                                                                                                                    gCAGTTGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGca                    <  2:418167/132‑1 (MQ=255)

                                                                                                                        ttGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCaa                                                                                  <  1:673082/66‑1 (MQ=255)

                                                                                                                        ttGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCaa                                                                                  >  2:673082/1‑66 (MQ=255)

                                                                                                                        ttGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGa                                                                              <  2:292943/70‑1 (MQ=255)

                                                                                                                        ttGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGa                                                                              >  1:292943/1‑70 (MQ=255)

                                                                                                                        ttGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGc                                       >  2:1081825/1‑109 (MQ=255)

                                                                                                                        ttGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGc                                       <  1:1081825/109‑1 (MQ=255)

                                                                                                                        ttGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGtt         >  2:573079/1‑139 (MQ=255)

                                                                                                                        ttGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGtt         >  2:531737/1‑139 (MQ=255)

                                                                                                                         tGATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGACGACAGGACCGTTTTCCAACCGATTAATCATAAAAATGAAAAATAATTGTTGCATCACACGCCAATGCGTGGCTTAATGCACATCAACGGatt        >  1:331765/1‑139 (MQ=255)

                                                                                                                          gATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              >  2:1198802/1‑36 (MQ=255)

                                                                                                                          gATGGAATAAACTTTTATCCACTTTATTGCTGTTTa                                                                                                              <  1:1198802/36‑1 (MQ=255)

                                                                                                                          gATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTg       <  1:573079/139‑1 (MQ=255)

                                                                                                                          gATGGAATAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTg       >  2:1218553/1‑139 (MQ=255)

                                                                                                                               aaTAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACg            <  2:545878/129‑1 (MQ=255)

                                                                                                                               aaTAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTa  >  1:625271/1‑139 (MQ=255)

                                                                                                                               aaTAAACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGCCTTAATGCACATCAACg            <  2:762055/129‑1 (MQ=255)

GGGTTTTGGGCGTATCAGTCGCCATGGTAAAGGAATGGGAATCCAGACGCGTGAAGCCTTCAAGTGCCGAACTAAAATTGATGC‑GTTTGATTCAAGCCAACCCGGCATTAAGTAAGCAGTTGATGGAATAGACTTTTATCCACTTTATTGCTGTTTACGGTCCTGATGACAGGACCGTTTTCCAACCGATTAATCATAAATATGAAAAATAATTGTTGCATCACCCGCCAATGCGTGGCTTAATGCACATCAACGGTTTGACGTA  >  NC_000913/3719638‑3719902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A