Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F1 I1 R1
|
770 |
51.4 |
2439994 |
93.8% |
2288714 |
110.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,922,931 |
(A)7→8 |
intergenic (‑491/+126) |
atpI ← / ← rsmG |
ATP synthase, membrane‑bound accessory factor/16S rRNA m(7)G527 methyltransferase, SAM‑dependent, glucose‑inhibited cell‑division protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,922,924 | 1 | . | A | 100.0%
| 155.6
/ NA
| 48 | intergenic (‑484/+133) | atpI/rsmG | ATP synthase, membrane‑bound accessory factor/16S rRNA m(7)G527 methyltransferase, SAM‑dependent, glucose‑inhibited cell‑division protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (22/26); total (22/26) |
TACACAACAAAAACCACCCATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACC‑AAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGGTTGTTGTTAACAGTCTAACCGGTCAATTTTTTAT > NC_000913/3922808‑3923039
|
tACACAACAAAAACCACCCATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttg > 2:797072/1‑139 (MQ=255)
acacAACAAAAACCACCCATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgt < 1:217813/139‑1 (MQ=255)
acaacaAAAACCACCCATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgttg > 2:956308/1‑139 (MQ=255)
ccATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGa > 1:828762/1‑139 (MQ=255)
ttGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACg < 1:797072/139‑1 (MQ=255)
aataatGTTTTGACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCTCGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAAt < 2:790858/139‑1 (MQ=255)
atGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTAt < 2:624026/100‑1 (MQ=255)
atGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTAt > 1:624026/1‑100 (MQ=255)
atGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTaa < 1:550928/139‑1 (MQ=255)
gTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAAcc > 2:277721/1‑139 (MQ=255)
ttttAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCa > 2:1104396/1‑139 (MQ=255)
aGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTatat < 1:277721/139‑1 (MQ=255)
gCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTTATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTa < 2:750764/127‑1 (MQ=255)
gCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGt > 1:415715/1‑119 (MQ=255)
gCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGt < 2:415715/119‑1 (MQ=255)
gCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTa > 1:750764/1‑127 (MQ=255)
cAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGt > 2:499625/1‑112 (MQ=255)
cAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGt < 1:499625/112‑1 (MQ=255)
cAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTatat > 1:1039693/1‑136 (MQ=255)
cAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTatat < 2:1039693/136‑1 (MQ=255)
aaTGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgt > 2:587602/1‑91 (MQ=255)
aaTGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgt < 1:587602/91‑1 (MQ=255)
atgatgGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTa < 2:187040/139‑1 (MQ=255)
ttAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTgg < 1:946202/139‑1 (MQ=255)
ttAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTgg < 1:956308/139‑1 (MQ=255)
aGCGCCGATTTTTAGCTGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTCgtt < 2:828762/139‑1 (MQ=255)
aGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGa < 1:882679/81‑1 (MQ=255)
aGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGa > 2:882679/1‑81 (MQ=255)
aGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCa < 1:12347/85‑1 (MQ=255)
aGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCa > 2:12347/1‑85 (MQ=255)
aGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGCAGAAAACCTGgtt > 2:673244/1‑139 (MQ=255)
cgcCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGt < 2:1087073/108‑1 (MQ=255)
cgcCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGt > 1:1087073/1‑108 (MQ=255)
cGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGgttgttgt > 1:495819/1‑139 (MQ=255)
gATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGCAGAAAACCTGgttgttgtt < 1:673244/139‑1 (MQ=255)
tttttAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGGTTGTTGTTaa < 2:495819/139‑1 (MQ=255)
aGACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGGTTGTTGTTAACAGTCTaa < 1:173707/139‑1 (MQ=255)
gACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgttg > 1:903122/1‑63 (MQ=255)
gACTGATATTTTCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCttgttg < 2:903122/63‑1 (MQ=255)
tCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTaa < 2:1078533/84‑1 (MQ=255)
tCACTAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTaa > 1:1078533/1‑84 (MQ=255)
tAATGACTTATTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGGTTGTTGTTAACAGTCTAACCGGTCAATTTTTTAt > 1:1216126/1‑139 (MQ=255)
aTTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTa > 2:979040/1‑70 (MQ=255)
aTTTTCTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTa < 1:979040/70‑1 (MQ=255)
cTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGgttgttgtt < 2:769212/99‑1 (MQ=255)
cTGCTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGgttgttgtt > 1:769212/1‑99 (MQ=255)
cTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGt < 2:165863/54‑1 (MQ=255)
cTTACCAAAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGt > 1:165863/1‑54 (MQ=255)
|
TACACAACAAAAACCACCCATTGACATTTTTAATAATGTTTTAACAGCCAATGATGGTTCTTAGCGCCGATTTTTAGCAGACTGATATTTTCACTAATGACTTATTTTCTGCTTACC‑AAAAAAAGCCACGTTATCTTGTTGATGCAAAAGAGTGAACGTGGCGTTAAATGTAACCAGTTATATCAGTAGAAAACCTGGTTGTTGTTAACAGTCTAACCGGTCAATTTTTTAT > NC_000913/3922808‑3923039
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
