Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F1 I2 R1	780	68.3	3343050	93.5%	3125751	102.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,219,088	G→A	intergenic (‑12/‑406)	aer ← / → patA	fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component/putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,219,088	0	G	A	100.0%	226.1 / NA	69	intergenic (‑12/‑406)	aer/patA	fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component/putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (37/32); total (37/32)

TCACCTGCACAAAAGTGTCATTAGCATGAGTGATATAGCTTTGCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTGTGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGATTTAAACACAAATCTAATTCCTTGATTTAAAATACTTT  >  NC_000913/3218956‑3219223

tCACCTGCACAAAAGTGTCATTAGCATGAGTGATATAGCTTTGCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAgg                                                                                                                                   >  2:1235681/1‑139 (MQ=255)

 cACCTGCACAAAAGTGTCATTAGCATGAGTGATATAGCTTTGCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGt                                                                                                                                  >  2:1627660/1‑139 (MQ=255)

     tGCACAAAAGTGTCATTAGCATGAGTGATATAGCTTTGCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTtata                                                                                                                              <  2:1019830/139‑1 (MQ=255)

                        cATGAGTGATATAGCTTTGCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTc                                                                                                           <  2:610085/139‑1 (MQ=255)

                            aGTGATATAGCTTTGCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCa                                                                                                                                     >  1:516222/1‑109 (MQ=255)

                            aGTGATATAGCTTTGCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCa                                                                                                                                     <  2:516222/109‑1 (MQ=255)

                                atatAGCTTTGCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTa                                                                                                   >  1:1214575/1‑139 (MQ=255)

                                          gCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTc                                                                                                           <  2:1506327/121‑1 (MQ=255)

                                          gCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTc                                                                                                           >  1:1506327/1‑121 (MQ=255)

                                          gCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGcccc                                                                                         >  2:1122778/1‑139 (MQ=255)

                                           cAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCgg                                                                                             <  1:909820/134‑1 (MQ=255)

                                           cAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCgg                                                                                             >  2:909820/1‑134 (MQ=255)

                                           cAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCg                                                                                        <  1:163402/139‑1 (MQ=255)

                                           cAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCg                                                                                        >  1:1649908/1‑139 (MQ=255)

                                              aTCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTg                                                                                     >  1:137872/1‑139 (MQ=255)

                                                cGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACACACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTCCg                                                                                   >  1:1106025/1‑139 (MQ=255)

                                                 ggTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCgg                                                                                  <  2:1649908/139‑1 (MQ=255)

                                                 ggTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCgg                                                                                  <  1:1235681/139‑1 (MQ=255)

                                                          cATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTg                                                                                     <  1:1016113/127‑1 (MQ=255)

                                                          cATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTATTGTCAGAGTTTATGTCGGCCCCGCTg                                                                                     >  2:1016113/1‑127 (MQ=255)

                                                             cAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAActt                                                                                                                 <  2:524058/96‑1 (MQ=255)

                                                             cAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAActt                                                                                                                 >  1:524058/1‑96 (MQ=255)

                                                             cAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAAcc                                                                      >  1:1346044/1‑139 (MQ=255)

                                                             cAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAAcc                                                                      <  2:163228/139‑1 (MQ=255)

                                                               gagTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGa                                                                    <  1:699106/139‑1 (MQ=255)

                                                                    gTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAAt                                                               <  2:1106025/139‑1 (MQ=255)

                                                                     tATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTc                                                                                                           >  1:1324204/1‑94 (MQ=255)

                                                                     tATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTc                                                                                                           <  2:1324204/94‑1 (MQ=255)

                                                                          tCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCgg                                                                                  >  1:1628145/1‑114 (MQ=255)

                                                                          tCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCgg                                                                                  <  2:1628145/114‑1 (MQ=255)

                                                                          tCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGAtt                                                         >  1:1076593/1‑139 (MQ=255)

                                                                          tCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTACGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTaa                                                                        <  2:1613068/124‑1 (MQ=255)

                                                                          tCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTACGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTaa                                                                        >  1:1613068/1‑124 (MQ=255)

                                                                              ccAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTtata                                                                                                                              <  1:1243146/66‑1 (MQ=255)

                                                                              ccAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTtata                                                                                                                              >  2:1243146/1‑66 (MQ=255)

                                                                              ccAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGa                                                     >  1:1292040/1‑139 (MQ=255)

                                                                              ccAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGa                                                     >  2:1177401/1‑139 (MQ=255)

                                                                               cAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGAt                                                    >  2:1475915/1‑139 (MQ=255)

                                                                                     ggTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGccc                                                                                          <  1:907368/95‑1 (MQ=255)

                                                                                     ggTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGccc                                                                                          >  2:907368/1‑95 (MQ=255)

                                                                                        aTTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTg                                           <  2:1346044/139‑1 (MQ=255)

                                                                                              cTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGAttt                                     <  1:1475915/139‑1 (MQ=255)

                                                                                                 ggTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGt                                                                                                      >  1:1310284/1‑71 (MQ=255)

                                                                                                 ggTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGt                                                                                                      <  2:1310284/71‑1 (MQ=255)

                                                                                                 ggTGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGATTTaaa                                  >  1:32007/1‑139 (MQ=255)

                                                                                                   tGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCgg                                                                                  <  1:823581/89‑1 (MQ=255)

                                                                                                   tGACATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCgg                                                                                  >  2:823581/1‑89 (MQ=255)

                                                                                                     aCATACGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGATTTAAAcaca                              <  2:137872/139‑1 (MQ=255)

                                                                                                          cGGATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGATTTAAACACAAATCt                         <  1:722482/139‑1 (MQ=255)

                                                                                                            gATGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGATTTAAACACAAATCTaa                       >  2:388831/1‑139 (MQ=255)

                                                                                                             aTGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGt                                                                                 >  2:548847/1‑80 (MQ=255)

                                                                                                             aTGAGAAGACATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGt                                                                                 <  1:548847/80‑1 (MQ=255)

                                                                                                                agaagaCATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCagag                                                                                                       >  2:1104260/1‑55 (MQ=255)

                                                                                                                agaagaCATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCagag                                                                                                       <  1:1104260/55‑1 (MQ=255)

                                                                                                                agaagaCATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGt                                                                                 >  2:931833/1‑77 (MQ=255)

                                                                                                                agaagaCATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGt                                                                                 <  1:931833/77‑1 (MQ=255)

                                                                                                                agaagaCATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGATTTAAACACAAATCTAATTcc                   >  1:205449/1‑139 (MQ=255)

                                                                                                                agaagaCATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGATTTAAACACAAATCTAATTcc                   >  2:1158549/1‑139 (MQ=255)

                                                                                                                agaagaCATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGATTTAAACACAAATCTAATTcc                   >  1:1136599/1‑139 (MQ=255)

                                                                                                                  aagaCATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCg                                                                                        <  1:1319950/68‑1 (MQ=255)

                                                                                                                  aagaCATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCg                                                                                        >  2:1319950/1‑68 (MQ=255)

                                                                                                                  aagaCATGTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCTATTTAAACACAAATCTAATTCCtt                 >  2:932888/1‑139 (MQ=255)

                                                                                                                         gTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGAt                                                                   >  1:181225/1‑82 (MQ=255)

                                                                                                                         gTTCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGAt                                                                   <  2:181225/82‑1 (MQ=255)

                                                                                                                          ttCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGAttt                                     <  1:1269291/111‑1 (MQ=255)

                                                                                                                          ttCGCGTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGAttt                                     >  2:1269291/1‑111 (MQ=255)

                                                                                                                            cgcgTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGAt                                                                   >  2:461864/1‑79 (MQ=255)

                                                                                                                            cgcgTCCTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGAt                                                                   <  1:461864/79‑1 (MQ=255)

                                                                                                                                 ccTATGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGATTTAAACACAAATCTAATTCCTTGATTTAAAATACttt  <  2:205449/139‑1 (MQ=255)

TCACCTGCACAAAAGTGTCATTAGCATGAGTGATATAGCTTTGCAGATCGGTAGTGGACATCAGAGTGGTATCGTCCGCCAGCGGGGTATTTTGCTGGGTGACATACGGATGAGAAGACATGTTCGCGTCCTGTGCAGGTTATATGGTTGTTAACTTCTTGTCAGAGTTTATGTCGGCCCCGCTGCGGTTATCTTTAACCGATTAATTTGATTTAGATCGCAATTTGCGATTTAAACACAAATCTAATTCCTTGATTTAAAATACTTT  >  NC_000913/3218956‑3219223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A