Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F1 I2 R1
|
780 |
68.3 |
3343050 |
93.5% |
3125751 |
102.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,853,155 |
G→A |
noncoding (103/140 nt) |
istR ← |
sRNA antisense regulators IstR‑1 and IstR‑2, affectr tisB, Hfq‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,853,155 | 0 | G | A | 98.0%
| 323.5
/ ‑2.5
| 102 | noncoding (103/140 nt) | istR | sRNA antisense regulators IstR‑1 and IstR‑2, affectr tisB, Hfq‑dependent |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (51/49); total (52/50) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 |
Only 100 of 102 total aligned reads displayed.
TTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGAGTATCGATCACAGTTTGCGTTTT > NC_000913/3853021‑3853288
|
tttATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGc > 2:719536/1‑139 (MQ=255)
gCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCg > 1:138753/1‑139 (MQ=255)
cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGc > 1:1589392/1‑139 (MQ=255)
cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGc > 1:1111649/1‑139 (MQ=255)
gCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAg > 2:512984/1‑139 (MQ=255)
cTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGc > 1:1499932/1‑139 (MQ=255)
tACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca < 2:470414/139‑1 (MQ=255)
tACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca < 1:512984/139‑1 (MQ=255)
tACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca < 1:719536/139‑1 (MQ=255)
aCAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGca > 2:91323/1‑136 (MQ=255)
aCAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGca < 1:91323/136‑1 (MQ=255)
aGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTg > 2:1128770/1‑139 (MQ=255)
ggAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGtat < 2:1111649/139‑1 (MQ=255)
gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGt > 1:1275023/1‑118 (MQ=255)
gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGt < 2:1275023/118‑1 (MQ=255)
gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCaaa < 2:437667/127‑1 (MQ=255)
gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCaaa > 1:437667/1‑127 (MQ=255)
aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcac > 1:1053997/1‑128 (MQ=255)
aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcac < 2:1053997/128‑1 (MQ=255)
aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCacac < 2:216565/130‑1 (MQ=255)
aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCacac > 1:216565/1‑130 (MQ=255)
aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGtat < 1:981053/135‑1 (MQ=255)
aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGtat > 2:981053/1‑135 (MQ=255)
aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATg > 2:794004/1‑139 (MQ=255)
aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATg > 1:790462/1‑139 (MQ=255)
aaTGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTc < 2:138753/139‑1 (MQ=255)
ggAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca > 1:1471845/1‑124 (MQ=255)
ggAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca < 2:1471845/124‑1 (MQ=255)
aaaaTTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCacac > 1:1550839/1‑123 (MQ=255)
aaaaTTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCacac < 2:1550839/123‑1 (MQ=255)
cAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca < 2:566987/110‑1 (MQ=255)
cAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca > 1:566987/1‑110 (MQ=255)
aGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCaaa < 1:75069/92‑1 (MQ=255)
aGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCaaa > 2:75069/1‑92 (MQ=255)
aGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATAc > 2:862735/1‑125 (MQ=255)
aGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATAc < 1:862735/125‑1 (MQ=255)
aGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGa > 1:161321/1‑139 (MQ=255)
gggTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAAc > 2:1458608/1‑139 (MQ=255)
ttGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAAcgcg < 2:1499932/139‑1 (MQ=255)
gATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca < 1:60361/90‑1 (MQ=255)
gATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca > 2:60361/1‑90 (MQ=255)
gATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca < 2:570602/90‑1 (MQ=255)
gATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca > 1:570602/1‑90 (MQ=255)
gATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCa > 2:917547/1‑139 (MQ=255)
tttGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGc > 2:1013592/1‑139 (MQ=255)
tttGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGc > 2:748553/1‑139 (MQ=255)
tGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAGCACTGaa < 1:1095973/101‑1 (MQ=255)
tGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGaa > 2:1095973/1‑101 (MQ=255)
gTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACt < 2:193539/97‑1 (MQ=255)
gTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACt > 1:193539/1‑97 (MQ=255)
tACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACt > 2:466947/1‑96 (MQ=255)
tACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACt < 1:466947/96‑1 (MQ=255)
tACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCAAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca < 1:609091/78‑1 (MQ=38)
tACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCAAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca > 2:609091/1‑78 (MQ=38)
ttGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGa < 1:1013592/139‑1 (MQ=255)
tGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGAc < 1:1458608/139‑1 (MQ=255)
tGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGAc < 1:917547/139‑1 (MQ=255)
cAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTaa > 2:977544/1‑56 (MQ=255)
cAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTaa < 1:977544/56‑1 (MQ=255)
cAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca > 2:1278262/1‑68 (MQ=255)
cAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca < 1:1278262/68‑1 (MQ=255)
cAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGa < 1:194261/110‑1 (MQ=255)
cAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGa > 2:194261/1‑110 (MQ=255)
cAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGt > 2:1607532/1‑139 (MQ=255)
aaCAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGa < 2:784022/83‑1 (MQ=255)
aaCAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGa > 1:784022/1‑83 (MQ=255)
aaCAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTa > 1:137643/1‑139 (MQ=255)
aaCAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTa < 2:1589392/139‑1 (MQ=255)
cAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGt > 2:536756/1‑139 (MQ=255)
aaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCa < 1:1607532/139‑1 (MQ=255)
aaaaCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCa < 2:137643/139‑1 (MQ=255)
cgccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca < 1:594691/51‑1 (MQ=255)
cgccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGcaca > 2:594691/1‑51 (MQ=255)
cgccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTGCGCGCAGAACGCGCAATTTCGGCACGAATTTTGAc < 2:1554679/120‑1 (MQ=255)
cgccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCcgcg > 1:139676/1‑89 (MQ=255)
cgccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCcgcg < 2:139676/89‑1 (MQ=255)
cgccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGAc > 1:1554679/1‑120 (MQ=255)
cgccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGa > 1:905946/1‑139 (MQ=255)
gccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGCGCATAg > 2:1239126/1‑134 (MQ=255)
gccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGCGCATAg < 1:1239126/134‑1 (MQ=255)
ccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGt < 2:1458154/120‑1 (MQ=255)
ccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGt > 1:1458154/1‑120 (MQ=255)
ccgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGAGt < 1:748553/139‑1 (MQ=255)
cgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTAtt > 2:412284/1‑122 (MQ=255)
cgGAGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTAtt < 1:412284/122‑1 (MQ=255)
aGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCa < 1:1659338/94‑1 (MQ=255)
aGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCa > 2:124923/1‑94 (MQ=255)
aGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCa < 1:124923/94‑1 (MQ=255)
aGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCa > 2:1659338/1‑94 (MQ=255)
aGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTa < 2:351930/121‑1 (MQ=255)
aGCGAGGTTTCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTa > 1:351930/1‑121 (MQ=255)
tttCGTCAGTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGAGTATCGATCACAg > 1:276952/1‑139 (MQ=255)
gTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGAGTATCGATCACAGTTTGCGtt < 1:794004/139‑1 (MQ=255)
gTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGAGTATCGATCACAGTTTGCGtt < 1:536756/139‑1 (MQ=255)
gTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGAGTATCGATCACAGTTTGCGtt < 2:790462/139‑1 (MQ=255)
gTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGAGTATCGATCACAGTTTGCGtt < 2:905946/139‑1 (MQ=255)
gTCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGAGTATCGATCACAGTTTGCGtt < 2:161321/139‑1 (MQ=255)
tCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTAtt > 2:934492/1‑103 (MQ=255)
tCGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTAtt < 1:934492/103‑1 (MQ=255)
cGCCTACGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGAGTATCGATCACAGTTTGCGtttt > 1:173495/1‑139 (MQ=255)
|
TTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATACGTGTTCCGCGCAGAACGCGCAATTTCGGCACGAATTTTGACGTATTTAGTGCATAGTTGAGTATCGATCACAGTTTGCGTTTT > NC_000913/3853021‑3853288
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
