Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F1 I2 R1	772	77.0	3769570	91.6%	3452926	105.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,511,332	T→C	T31A (ACA→GCA)	yhfY ←	PRD domain protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,511,332	0	T	C	100.0%	383.6 / NA	105	T31A (ACA→GCA)	yhfY	PRD domain protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (51/54); total (51/54)

Only 100 of 105 total aligned reads displayed.

GCGCCAGTTCTGCCAGCAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGTTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCA  >  NC_000913/3511200‑3511467

gcgcCAGTTCTGCCAGCAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAg                                                                                                                                   >  2:1307661/1‑139 (MQ=255)

gcgcCAGTTCTGCCAGCAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAg                                                                                                                                   >  2:839623/1‑139 (MQ=255)

 cgcCAGTTCTGCCAGCAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGt                                                                                                                                  <  2:392433/139‑1 (MQ=255)

 cgcCAGTTCTGCCAGCAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGt                                                                                                                                  >  1:423058/1‑139 (MQ=255)

 cgcCAGTTCTGCCAGCAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGt                                                                                                                                  >  2:233331/1‑139 (MQ=255)

 cgcCAGTTCTGCCAGCAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGt                                                                                                                                  >  2:785182/1‑139 (MQ=255)

        tCTGCCAGCAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTga                                                                                                                           <  2:423058/139‑1 (MQ=255)

           gCCAGCAACTCGTTATCCAGCGGCTCTCTATCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTTATCGCCGTCGTTCCTTGCTCCCTGCGCACCGGCAGATGCCACTCTGCTTCCAGTACGTTgccga                                                                                                                        >  1:714259/1‑139 (MQ=255)

            ccAGCAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTgacgac                                                                                                                       <  1:107636/139‑1 (MQ=255)

                cAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGc                                                                                                                   >  1:739255/1‑139 (MQ=255)

                    tCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGcatca                                                                                                               <  2:739255/139‑1 (MQ=255)

                    tCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGcatca                                                                                                               <  1:839623/139‑1 (MQ=255)

                      gTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATg                                                                                                             >  1:1623003/1‑139 (MQ=255)

                       ttATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGc                                                                                                            <  1:785182/139‑1 (MQ=255)

                              gCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGTACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCa                                                                                                     >  1:1091079/1‑139 (MQ=255)

                              gCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCa                                                                                                     <  1:1194228/139‑1 (MQ=255)

                               cGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAg                                                                                                    <  1:114315/139‑1 (MQ=255)

                               cGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAg                                                                                                    <  2:313900/139‑1 (MQ=255)

                               cGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAg                                                                                                    <  2:679240/139‑1 (MQ=255)

                               cGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAg                                                                                                    <  2:873815/139‑1 (MQ=255)

                                  ctctATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATg                                                                                                 <  1:304604/139‑1 (MQ=255)

                                    ctATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTga                                                                                                                           <  2:111684/111‑1 (MQ=255)

                                    ctATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTga                                                                                                                           >  1:111684/1‑111 (MQ=255)

                                    ctATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGcatca                                                                                                               <  1:1820935/123‑1 (MQ=255)

                                    ctATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGcatca                                                                                                               >  2:1820935/1‑123 (MQ=255)

                                       tttCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCtt                                                                                            <  1:497194/139‑1 (MQ=255)

                                               ccacGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATaa                                                                                    >  1:1650113/1‑139 (MQ=255)

                                                 acGGCGACTGCGCATCAGTGCACTCACCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGACACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACg                                                                                  >  1:1252075/1‑139 (MQ=255)

                                                  cGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTa                                                                                           <  2:92534/129‑1 (MQ=255)

                                                  cGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTa                                                                                           >  1:92534/1‑129 (MQ=255)

                                                   ggCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGcatca                                                                                                               <  1:141175/108‑1 (MQ=255)

                                                   ggCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGcatca                                                                                                               >  2:141175/1‑108 (MQ=255)

                                                   ggCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACgcc                                                                                >  1:980317/1‑139 (MQ=255)

                                                                   tGCACTCGCCATATGTGTCATCTCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAgg                                                                <  1:1307661/139‑1 (MQ=255)

                                                                   tGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAgg                                                                >  1:850865/1‑139 (MQ=255)

                                                                   tGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAgg                                                                >  2:396605/1‑139 (MQ=255)

                                                                    gCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGt                                                               <  2:1650113/139‑1 (MQ=255)

                                                                     cACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCtt                                                                                                         >  2:1027069/1‑96 (MQ=255)

                                                                     cACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCtt                                                                                                         <  1:1027069/96‑1 (MQ=255)

                                                                     cACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGtt                                                              >  2:1385871/1‑139 (MQ=255)

                                                                         cGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGt                                                          <  1:233331/139‑1 (MQ=255)

                                                                          gCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTg                                                                                                       >  2:1461044/1‑93 (MQ=255)

                                                                          gCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTg                                                                                                       <  1:1461044/93‑1 (MQ=255)

                                                                          gCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAg                                                                                                    >  2:281793/1‑96 (MQ=255)

                                                                          gCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAg                                                                                                    <  1:281793/96‑1 (MQ=255)

                                                                          gCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTcc                                                                                              >  1:858463/1‑102 (MQ=255)

                                                                          gCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTcc                                                                                              <  2:858463/102‑1 (MQ=255)

                                                                          gCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCg                                                                         >  1:896312/1‑123 (MQ=255)

                                                                          gCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCg                                                                         <  2:896312/123‑1 (MQ=255)

                                                                            cATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTg                                                       <  1:1608694/139‑1 (MQ=255)

                                                                             atatGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTgg                                                      <  2:1623003/139‑1 (MQ=255)

                                                                                  tgtCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTcc                                                 <  2:887747/139‑1 (MQ=255)

                                                                                    tCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTg                                                                                                                            <  2:570210/62‑1 (MQ=255)

                                                                                    tCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGGCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCat                                               >  2:531398/1‑139 (MQ=255)

                                                                                    tCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCat                                               >  1:1819152/1‑139 (MQ=255)

                                                                                      aTCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTc                                                                                               <  1:636008/89‑1 (MQ=255)

                                                                                      aTCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTc                                                                                               >  2:636008/1‑89 (MQ=255)

                                                                                      aTCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTa                                                                                           <  1:346678/93‑1 (MQ=255)

                                                                                      aTCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTa                                                                                           >  2:346678/1‑93 (MQ=255)

                                                                                        cGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTc                                                  <  2:933843/132‑1 (MQ=255)

                                                                                        cGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTc                                                  >  1:933843/1‑132 (MQ=255)

                                                                                        cGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCa                                           >  2:803273/1‑139 (MQ=255)

                                                                                         gCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAg                                          <  1:1688576/139‑1 (MQ=255)

                                                                                          ccATCGTTCCTTGCTCACTGCGCACCGGCAGATGGTACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGa                                         <  2:1091079/139‑1 (MQ=255)

                                                                                          ccATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCtt                                                                                            >  1:1650810/1‑88 (MQ=255)

                                                                                          ccATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCtt                                                                                            <  2:1650810/88‑1 (MQ=255)

                                                                                          ccATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCt                                                        >  2:1045371/1‑124 (MQ=255)

                                                                                          ccATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCt                                                        <  1:1045371/124‑1 (MQ=255)

                                                                                            aTCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTgacg                                                                                                                         <  1:1207079/57‑1 (MQ=255)

                                                                                            aTCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTgacg                                                                                                                         >  2:1207079/1‑57 (MQ=255)

                                                                                                       cTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAg                                                                    <  1:1669330/99‑1 (MQ=255)

                                                                                                       cTCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAg                                                                    >  2:1669330/1‑99 (MQ=255)

                                                                                                        tCACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACTCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTtaa                           >  2:1001076/1‑139 (MQ=255)

                                                                                                         cACTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTtaat                          <  2:826665/139‑1 (MQ=255)

                                                                                                          aCTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCt                                                                                             <  2:1251574/71‑1 (MQ=255)

                                                                                                          aCTGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCt                                                                                             >  1:1251574/1‑71 (MQ=255)

                                                                                                            tGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGc                                                                        <  1:1129850/90‑1 (MQ=255)

                                                                                                            tGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTg                                                       >  1:1097001/1‑107 (MQ=255)

                                                                                                            tGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTg                                                       <  2:1097001/107‑1 (MQ=255)

                                                                                                            tGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAAc                       >  1:607795/1‑139 (MQ=255)

                                                                                                            tGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAAc                       >  2:1395027/1‑139 (MQ=255)

                                                                                                            tGCGCACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAAc                       >  1:1286625/1‑139 (MQ=255)

                                                                                                              cgcACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTc                     >  2:574272/1‑139 (MQ=255)

                                                                                                               gcACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTc                                                                                               <  2:320540/64‑1 (MQ=255)

                                                                                                               gcACCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTc                                                                                               >  1:320540/1‑64 (MQ=255)

                                                                                                                 aCCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGcatca                                                                                                               >  1:1020794/1‑46 (MQ=255)

                                                                                                                 aCCGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGcatca                                                                                                               <  2:1020794/46‑1 (MQ=255)

                                                                                                                 aCCGGCAGATGGCACTCTGCTTCCAGTACGTTGAAGACCTGCATCATGCCTTTGCAGATGTCCtt                                                                                            >  1:1703252/1‑65 (MQ=255)

                                                                                                                 aCCGGCAGATGGCACTCTGCTTCCAGTACGTTGAAGACCTGCATCATGCCTTTGCAGATGTCCtt                                                                                            <  2:1703252/65‑1 (MQ=255)

                                                                                                                  ccGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGtt                 >  1:1146458/1‑139 (MQ=255)

                                                                                                                   cGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGt                                                     >  1:210738/1‑102 (MQ=255)

                                                                                                                   cGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGt                                                     <  2:210738/102‑1 (MQ=255)

                                                                                                                   cGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTc                <  1:1001076/139‑1 (MQ=255)

                                                                                                                   cGGCAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTc                <  1:355469/139‑1 (MQ=255)

                                                                                                                      cAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCaa                                                                      >  1:242433/1‑82 (MQ=255)

                                                                                                                      cAGATGGCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCaa                                                                      <  2:242433/82‑1 (MQ=255)

                                                                                                                            gCACTCTGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTcccc       <  1:1395027/139‑1 (MQ=255)

                                                                                                                               ctctGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCcact    >  2:52622/1‑139 (MQ=255)

                                                                                                                                 ctGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCcactca  <  1:52622/139‑1 (MQ=255)

                                                                                                                                 ctGCTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCcactca  <  1:803273/139‑1 (MQ=255)

GCGCCAGTTCTGCCAGCAACTCGTTATCCAGCGGCTCTATTTCTTCACCACGGCGACTGCGCATCAGTGCACTCGCCATATGTGTCATCGCCATCGTTCCTTGCTCACTGCGCACCGGCAGATGGCACTCTGTTTCCAGTACGTTGACGACCTGCATCATGCCTTTGCAGATGTCCTTATCAATAACGCCTGCCTCGCAAAGCAGGTTGAGTCTGGTTTCCATATCAGATGCCTTTCGTTTAATAACTCGGTTCCTGTTCCCCACTCA  >  NC_000913/3511200‑3511467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A