Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F1 I1 R1 776 60.0 3074904 90.1% 2770488 104.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,292,538 G→A A266A (GCC→GCT)  rsmI ← 16S rRNA C1402 2'‑O‑ribose methyltransferase, SAM‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,292,5380GA100.0% 239.2 / NA 73A266A (GCC→GCT) rsmI16S rRNA C1402 2'‑O‑ribose methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (42/31);  total (42/31)

GTCATCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCGGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATCAGCACCATTTCGCCTTTGCGACGGT  >  NC_000913/3292418‑3292671
                                                                                                                        |                                                                                                                                     
gTCATCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCtttt                                                                                                                     <  1:93678/139‑1 (MQ=255)
   aTCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTc                                                                                                                  >  2:1066402/1‑139 (MQ=255)
   aTCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTc                                                                                                                  >  1:199619/1‑139 (MQ=255)
         cGGTAAAAGAAGACGTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGc                                                                                                            >  2:521047/1‑139 (MQ=255)
          ggTAAAAGAAGACGTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCa                                                                                                           >  1:25316/1‑139 (MQ=255)
                 gaagaCGTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGc                                                                                                    <  1:657875/139‑1 (MQ=255)
                    gaCGTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGtt                                                                                                        >  2:1198702/1‑132 (MQ=255)
                    gaCGTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGtt                                                                                                        <  1:1198702/132‑1 (MQ=255)
                       gTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTag                                                                                              <  2:25316/139‑1 (MQ=255)
                       gTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTag                                                                                              <  1:521047/139‑1 (MQ=255)
                        ttGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCa                                                                                                           <  1:51430/125‑1 (MQ=255)
                        ttGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCa                                                                                                           >  2:51430/1‑125 (MQ=255)
                        ttGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTagc                                                                                             >  2:1301919/1‑139 (MQ=255)
                        ttGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTagc                                                                                             >  1:1333307/1‑139 (MQ=255)
                         tGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATGCAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTagca                                                                                            >  1:43934/1‑139 (MQ=255)
                         tGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTagca                                                                                            >  2:1215986/1‑139 (MQ=255)
                                 gATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGc                                                                                    <  1:770760/139‑1 (MQ=255)
                                     aacgcaacgcTTCGGCACTGTTACCCCTGCTGCTCCAGGGCGTACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGtt                                                                                                        <  1:940984/115‑1 (MQ=255)
                                     aacgcaacgcTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTCCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGtt                                                                                                        >  2:940984/1‑115 (MQ=255)
                                      acgcaacgcTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTgcg                                                                               <  1:1066402/139‑1 (MQ=255)
                                      acgcaacgcTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTgcg                                                                               <  1:1215986/139‑1 (MQ=255)
                                                tCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATcg                                                                     <  1:1301919/139‑1 (MQ=255)
                                                      cTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGt                                                               <  1:698017/139‑1 (MQ=255)
                                                       tGTTACCCCTGCTGCTCCAGCGCATACTTATGCAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTa                                                              <  2:43934/139‑1 (MQ=255)
                                                       tGTCACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTa                                                              <  1:988660/139‑1 (MQ=255)
                                                         ttACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAg                                                            >  1:154331/1‑139 (MQ=255)
                                                                 gctgctCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCttcttc                                                    >  1:1462930/1‑139 (MQ=255)
                                                                 gctgctCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCttcttc                                                    >  2:1479909/1‑139 (MQ=255)
                                                                   tgctCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGcc                                                                                                   >  2:1384985/1‑90 (MQ=255)
                                                                   tgctCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGcc                                                                                                   <  1:1384985/90‑1 (MQ=255)
                                                                     ctCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAgcg                                                                                         >  1:9527/1‑98 (MQ=255)
                                                                     ctCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAgcg                                                                                         <  2:9527/98‑1 (MQ=255)
                                                                           cgcATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTa                                          <  2:1436561/139‑1 (MQ=255)
                                                                                     taCAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGtct                                                         >  1:968975/1‑114 (MQ=255)
                                                                                     taCAGCGCATTTTTCGTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGtct                                                         <  2:968975/114‑1 (MQ=255)
                                                                                      aCAGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGAc                               >  2:5075/1‑139 (MQ=255)
                                                                                        aGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCg                                                                                                              >  2:1456622/1‑58 (MQ=255)
                                                                                        aGCGCATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCg                                                                                                              <  1:1456622/58‑1 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCgg                                                                                                             >  1:1262475/1‑57 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCgg                                                                                                             <  2:1262475/57‑1 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGt                                                                                  <  2:1501880/84‑1 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGt                                                                                  >  1:1501880/1‑84 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGt                                                               <  1:32947/103‑1 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGt                                                               >  1:825079/1‑103 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGt                                                               <  2:825079/103‑1 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGt                                                               >  2:32947/1‑103 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTa                                                              <  2:97389/104‑1 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTa                                                              <  2:619438/104‑1 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTa                                                              >  1:97389/1‑104 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTa                                                              >  1:619438/1‑104 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAg                                                            <  1:1043710/106‑1 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAg                                                            >  2:1043710/1‑106 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTa                                          <  1:1030050/124‑1 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTa                                          >  2:1030050/1‑124 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGAc                                      <  2:856506/128‑1 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGATCTTCGACCATc                           >  1:993551/1‑139 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATc                           >  1:461376/1‑139 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATc                           >  1:1525577/1‑139 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATc                           >  1:1526399/1‑139 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATc                           >  1:677727/1‑139 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATc                           >  2:1103378/1‑139 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATc                           >  2:1258016/1‑139 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCATGTGCTTTATGAc                                      >  1:856506/1‑128 (MQ=255)
                                                                                          cgcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCCCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGCAAGTCTTCTTCCTTTGCTTTATGTCCCTccgaaaaa                           >  2:648432/1‑132 (MQ=255)
                                                                                          cgcAGTTTTCTTCACGCCGTGACTTTTTCCAGCCAGCGCCGCCGCTTTTTTCAGCATCATTTCCGGCTTTCGCAGCGCCAGCGTGCGCATGGCATCGGCCGGTAAGACTTCTTCCTTCCCCTTTTGACCTTCCACACTc                           >  2:893935/1‑139 (MQ=255)
                                                                                           gcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTa                                          >  1:833961/1‑123 (MQ=255)
                                                                                           gcATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTa                                          <  2:833961/123‑1 (MQ=255)
                                                                                            cATTTTTCTTCACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATCAg                         >  1:150213/1‑139 (MQ=255)
                                                                                                    ttcACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATCAGCACCAttt                 <  1:1103378/139‑1 (MQ=255)
                                                                                                      cACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATCAGCACCAttt                 <  2:1126024/137‑1 (MQ=255)
                                                                                                      cACGCCGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATCAGCACCAttt                 >  1:1126024/1‑137 (MQ=255)
                                                                                                           cGTGAATTTCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATCAGCACCATTTCGCCttt          >  1:759576/1‑139 (MQ=255)
                                                                                                                   tCTGCAGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATCAGCACCATTTCGCCTTTGCGACGGt  >  1:1127919/1‑139 (MQ=255)
                                                                                                                        |                                                                                                                                     
GTCATCGTGCGGTAAAAGAAGACGTTGCGTTTTGATTAACGCAACGCTTCGGCACTGTTACCCCTGCTGCTCCAGCGCATACTTATACAGCGCATTTTTCTTCACGCCGTGAATTTCTGCGGCCAGCGCCGCCGCTTTTTTCAGCGGCAGTTCTGCCTGTAGCAGCGCCAGCGTGCGCAGGGCATCGGCGGGTAAGTCTTCTTCCTGTGCTTTATGACCTTCGACAATCAGCACCATTTCGCCTTTGCGACGGT  >  NC_000913/3292418‑3292671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A