Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F1 I1 R1	776	60.0	3074904	90.1%	2770488	104.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,465,441	G→A	T120T (ACG→ACA)	gspM →	general secretory pathway component, cryptic

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,465,441	0	G	A	100.0%	239.1 / NA	74	T120T (ACG→ACA)	gspM	general secretory pathway component, cryptic
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (30/44); total (30/44)

AGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACGGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGCAACAATAATGACAATGCTACTGCC  >  NC_000913/3465305‑3465559

aGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGc                                                                                                                      <  1:304158/139‑1 (MQ=255)

 gCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGca                                                                                                                     <  1:151529/139‑1 (MQ=255)

     aTCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAgg                                                                                                                 <  2:875567/139‑1 (MQ=255)

       cAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTa                                                                                                               <  2:542294/139‑1 (MQ=255)

            atatCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          <  2:836535/139‑1 (MQ=255)

            atatCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          >  2:784944/1‑139 (MQ=255)

            atatCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          <  2:49749/139‑1 (MQ=255)

                  ttCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTAt                                                                                                    <  1:477196/139‑1 (MQ=255)

                  ttCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTAt                                                                                                    <  1:1091540/139‑1 (MQ=255)

                   tctcGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGcac                                                                                                                    >  2:1491564/1‑122 (MQ=255)

                   tctcGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGcac                                                                                                                    <  1:1491564/122‑1 (MQ=255)

                    ctcGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          <  2:354458/131‑1 (MQ=255)

                    ctcGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          >  1:354458/1‑131 (MQ=255)

                     tcGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGt                                                                                                 >  1:548257/1‑139 (MQ=255)

                               aaaaCGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGAc                                                                                       <  1:86034/139‑1 (MQ=255)

                                  aCGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCtt                                                                                    <  2:1461153/139‑1 (MQ=255)

                                        gaATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGttt                                                                              <  2:1011802/139‑1 (MQ=255)

                                           tttGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTAct                                                                           >  1:627374/1‑139 (MQ=255)

                                                         tGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGa                                                             <  1:1005886/139‑1 (MQ=255)

                                                               aCGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGAt                                                       <  2:657394/139‑1 (MQ=255)

                                                                   cccGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTa                                                                                                               >  1:1028292/1‑79 (MQ=255)

                                                                   cccGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTa                                                                                                               <  2:1028292/79‑1 (MQ=255)

                                                                               tctGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTg                                       >  2:1355278/1‑139 (MQ=255)

                                                                                ctGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          <  2:829994/71‑1 (MQ=255)

                                                                                ctGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          >  1:829994/1‑71 (MQ=255)

                                                                                 tGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGcac                                                                                                                    >  1:338925/1‑60 (MQ=255)

                                                                                 tGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGcac                                                                                                                    <  2:338925/60‑1 (MQ=255)

                                                                                 tGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACg                                                              <  1:623884/114‑1 (MQ=255)

                                                                                 tGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACg                                                              >  2:623884/1‑114 (MQ=255)

                                                                                 tGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTc                                     >  2:150930/1‑139 (MQ=255)

                                                                                      aTTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          >  1:327674/1‑65 (MQ=255)

                                                                                      aTTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          <  2:640210/65‑1 (MQ=255)

                                                                                      aTTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          <  2:327674/65‑1 (MQ=255)

                                                                                      aTTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATa                                                                                                          >  1:640210/1‑65 (MQ=255)

                                                                                      aTTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGTTCACCCTCAGGCATTTGTCCTTCa                                >  2:750467/1‑139 (MQ=255)

                                                                                      aTTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCa                                <  1:1355278/139‑1 (MQ=255)

                                                                                      aTTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCa                                <  2:216946/139‑1 (MQ=255)

                                                                                         cATCCTGTCACCGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGTTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAggg                             <  1:90450/139‑1 (MQ=255)

                                                                                            ccTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGc                          <  2:548257/139‑1 (MQ=255)

                                                                                             cTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGca                         <  2:627374/139‑1 (MQ=255)

                                                                                             cTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGca                         >  2:578691/1‑139 (MQ=255)

                                                                                              tGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGTTCACCCTCAGGCATTTGTCCTTCAGGGAGcaa                        <  1:750467/139‑1 (MQ=255)

                                                                                               gTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGa                                                                  <  2:896625/96‑1 (MQ=255)

                                                                                               gTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGa                                                                  >  1:896625/1‑96 (MQ=255)

                                                                                                  acaGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGCAACaat                    >  2:1427897/1‑139 (MQ=255)

                                                                                                     gCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGCAACaataat                 <  1:150930/139‑1 (MQ=255)

                                                                                                     gCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGCAACaataat                 <  1:784944/139‑1 (MQ=255)

                                                                                                     gCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGCAACaataat                 <  1:605437/139‑1 (MQ=255)

                                                                                                      ttCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGAcc                                                                                      <  2:391973/68‑1 (MQ=255)

                                                                                                      cTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTAt                                                                                                    <  2:135265/55‑1 (MQ=255)

                                                                                                      cTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTAt                                                                                                    >  1:135265/1‑55 (MQ=255)

                                                                                                      cTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGAcc                                                                                      >  1:391973/1‑69 (MQ=255)

                                                                                                      cTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCAccc                                                  >  1:509682/1‑105 (MQ=255)

                                                                                                      cTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCAccc                                                  <  2:509682/105‑1 (MQ=255)

                                                                                                      cTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGCAACAATAATg                >  1:149576/1‑139 (MQ=255)

                                                                                                        ccccTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGt                                                                                                                <  1:1103151/41‑1 (MQ=255)

                                                                                                        ccccTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGt                                                                                                                >  2:1103151/1‑41 (MQ=255)

                                                                                                          ccTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGc                                                                      >  2:1149110/1‑81 (MQ=255)

                                                                                                          ccTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGc                                                                      <  1:1149110/81‑1 (MQ=255)

                                                                                                          ccTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCAccc                                                  <  1:743/101‑1 (MQ=255)

                                                                                                          ccTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCAccc                                                  >  2:743/1‑101 (MQ=255)

                                                                                                          ccTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGc                                            >  1:1476450/1‑107 (MQ=255)

                                                                                                          ccTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGc                                            <  2:1476450/107‑1 (MQ=255)

                                                                                                          ccTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGca                         >  2:1159223/1‑126 (MQ=255)

                                                                                                          ccTCGAAAACGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGca                         <  1:1159223/126‑1 (MQ=255)

                                                                                                              gAAAACGTCTCCCGCTGGCTCACTACAGCACAGGt                                                                                                                <  2:1492785/35‑1 (MQ=255)

                                                                                                              gAAAACGTCTCCCGCTGGCTCACTACAGCACAGGt                                                                                                                >  1:1492785/1‑35 (MQ=255)

                                                                                                                   cGTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGCAACAATAATGAc              <  1:878026/128‑1 (MQ=255)

                                                                                                                   cGTCTCCCGCTGGCTCAATACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGCAACAATAATGAc              >  2:878026/1‑128 (MQ=255)

                                                                                                                    gTCTCCCGCTGGCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGCAACAATAATGACAATGCTACTGcc  <  2:1061746/139‑1 (MQ=255)

                                                                                                                               gCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTAct                                                                           <  1:1518223/55‑1 (MQ=255)

                                                                                                                               gCTCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTAct                                                                           >  2:1518223/1‑55 (MQ=255)

                                                                                                                                 tCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGAt                                                       >  2:113654/1‑73 (MQ=255)

                                                                                                                                 tCACTACAGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGAt                                                       <  1:113654/73‑1 (MQ=255)

AGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTGACAATTCATCCTGTCACAGCTCCCCTCGAAAACGTCTCCCGCTGGCTCACTACGGCACAGGTAACATACGGTATTGTTATTGAAGACCTTCAGTTTACTCTTGCCGGAAACGAAGAGATCACCCTCAGGCATTTGTCCTTCAGGGAGCAACAATAATGACAATGCTACTGCC  >  NC_000913/3465305‑3465559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A