Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F1 I1 R1 759 71.0 3673240 91.5% 3361014 104.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,129,500 Δ646 bp IS5‑mediated [yghO] [yghO]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3129500 3131263–3130143 644–1764 60 [1] [17] 22 [yghO]–insH1 [yghO], insH1

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 31294991 (0.010)59 (0.810) 36/208 0.7 98.3% pseudogene (645/1101 nt) yghO pseudogene, IS‑interrupted
?NC_000913 3130146 = NA (NA)noncoding (1/1195 nt) IS5 repeat region

GATK/CNVnator alignment

N/A