Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F1 I1 R1
|
759 |
71.0 |
3673240 |
91.5% |
3361014 |
104.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,785,051 |
(A)7→6 |
intergenic (‑36/‑209) |
yibN ← / → gpmM |
putative rhodanese‑related sulfurtransferase/phosphoglycero mutase III, cofactor‑independent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,785,045 | 0 | A | . | 100.0%
| 224.1
/ NA
| 54 | intergenic (‑30/‑215) | yibN/gpmM | putative rhodanese‑related sulfurtransferase/phosphoglycero mutase III, cofactor‑independent |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (28/26); total (28/26) |
GAGGTCAGGCTCTTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATTAAAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATA > NC_000913/3784912‑3785177
|
gAGGTCAGGCTCTTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATTaaaaaa > 2:1504858/1‑139 (MQ=255)
gAGGTCAGGCTCTTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATTaaaaaa > 1:499363/1‑139 (MQ=255)
aGGCTCTTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGa > 1:269034/1‑139 (MQ=255)
ggCTCTTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGCTCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGaa < 1:1098320/139‑1 (MQ=255)
ggCTCTTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGaa < 2:269034/139‑1 (MQ=255)
ggCTCTTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGaa < 1:1504858/139‑1 (MQ=255)
ctctTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAg < 1:1828434/139‑1 (MQ=255)
tCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTgcg > 2:487971/1‑139 (MQ=255)
aaGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGt < 1:487971/139‑1 (MQ=255)
ccaccaGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCaaa > 2:928390/1‑139 (MQ=255)
tAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATAcagcc < 2:499363/139‑1 (MQ=255)
aTCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCgg < 2:1769811/121‑1 (MQ=255)
aTCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCgg > 1:1769811/1‑121 (MQ=255)
aTCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGt > 2:1497927/1‑139 (MQ=255)
cAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATAcagccagc < 2:1369870/132‑1 (MQ=255)
cAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATAcagccagc > 1:1369870/1‑132 (MQ=255)
aGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAAc < 1:1497927/139‑1 (MQ=255)
agtatcgcctggTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGt > 2:1379286/12‑112 (MQ=255)
agtatcgcctggTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGt < 1:1379286/101‑1 (MQ=255)
gATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCgg > 2:1546205/1‑139 (MQ=255)
gATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCgg > 1:130658/1‑139 (MQ=255)
gATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACCGGAATGCAATTTTGCgg > 2:1328238/1‑139 (MQ=255)
aCGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTgcg < 2:1493759/87‑1 (MQ=255)
aCGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTgcg > 1:1493759/1‑87 (MQ=255)
cGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATAcagccagc > 1:1477246/1‑108 (MQ=255)
cGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATAcagccagc < 2:1477246/108‑1 (MQ=255)
cGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGgcgc > 1:675445/1‑139 (MQ=255)
cGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGgcgc > 2:190459/1‑139 (MQ=255)
cGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGgcgc > 2:550590/1‑139 (MQ=255)
cGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGgcgc > 2:471564/1‑139 (MQ=255)
cGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGgcgc > 1:1483853/1‑139 (MQ=255)
gCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGcga > 2:931297/1‑139 (MQ=255)
aacaaATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTgcg > 2:2390/1‑81 (MQ=255)
aacaaATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTgcg < 1:2390/81‑1 (MQ=255)
aTTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGaaaaaa < 1:100798/139‑1 (MQ=255)
ttGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGaaaaaaa > 2:283735/1‑139 (MQ=255)
cATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGc < 1:931297/139‑1 (MQ=255)
cTTGCATGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCt > 1:1818828/1‑139 (MQ=255)
tGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGa > 2:1103066/1‑47 (MQ=39)
tGGGGGGTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGa < 1:1103066/47‑1 (MQ=39)
ggggggTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATAcagccagc > 2:1222019/1‑79 (MQ=255)
ggggggTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATAcagccagc < 1:1222019/79‑1 (MQ=255)
ggggggTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCg > 1:1289213/1‑139 (MQ=255)
ggggTAACAACTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGc < 2:130658/139‑1 (MQ=255)
acTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGa > 1:639574/1‑139 (MQ=255)
cTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGc > 2:996945/1‑129 (MQ=255)
cTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGc < 1:996945/129‑1 (MQ=255)
cTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAg < 2:1289213/139‑1 (MQ=255)
cTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAg < 2:639574/139‑1 (MQ=255)
cTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAg < 1:1832371/139‑1 (MQ=255)
cTCCCGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAg < 1:928390/139‑1 (MQ=255)
cccGACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCg > 2:1213321/1‑139 (MQ=255)
gACGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTc < 2:675445/139‑1 (MQ=255)
aCGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCg < 1:190459/139‑1 (MQ=255)
cGTAGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGt > 2:1743159/1‑139 (MQ=255)
aGTGATT‑AAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGtata < 1:1213321/139‑1 (MQ=255)
|
GAGGTCAGGCTCTTAAACGTAGTCACAAGAACCGCCACCAGTAACGCGATCCAGGCGATACTCAGTATGGGATGACGGCCAACAAATTGCATAATTTCTTGCATGGGGGGTAACAACTCCCGACGTAGTGATTAAAAAAACCAGGAAAGGAGTATACCTGCGCGGTGCGGCAAATACAGCCAGCGCGTTAACTGGAATGCAATTTTGCGGGGCGCGACGAAAAAAAAGCGTAAATCTGGCATCGGCTTGCCGCGAGCGGTCGTATA > NC_000913/3784912‑3785177
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
