Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F1 I1 R1 759 71.0 3673240 91.5% 3361014 104.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,862,497 C→T pseudogene (1107/1617 nt) glvC ← pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,862,4970CT100.0% 313.6 / NA 96pseudogene (1107/1617 nt)glvCpseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (46/50);  total (46/50)

GCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCG  >  NC_000913/3862362‑3862627
                                                                                                                                        |                                                                                                                                  
gCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAg                                                                                                                                 >  1:911572/1‑139 (MQ=255)
 cacaTGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGt                                                                                                                                >  2:111223/1‑139 (MQ=255)
      gTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATTCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAAt                                                                                                                            >  1:1221289/1‑139 (MQ=255)
      gTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATc                                                                                                                           >  2:429544/1‑139 (MQ=255)
       ttGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCa                                                                                                                          <  2:1333814/139‑1 (MQ=255)
          aaCTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGAc                                                                                                                       >  2:756205/1‑139 (MQ=255)
            cTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCt                                                                                                                     >  2:160153/1‑139 (MQ=255)
               cAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCg                                                                                                                  <  2:732601/139‑1 (MQ=255)
                 gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGcc                                                                                                                <  2:404938/139‑1 (MQ=255)
                      aGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGtt                                                                                                          <  1:1513212/139‑1 (MQ=255)
                        tgtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTca                                                                                                        <  1:756205‑M1/139‑3 (MQ=255)
                         gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcac                                                                                                       >  2:161525‑M1/1‑136 (MQ=255)
                         gtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcac                                                                                                       <  1:161525‑M1/139‑4 (MQ=255)
                           gCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcacca                                                                                                     >  1:917347‑M1/1‑134 (MQ=255)
                            cGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccac                                                                                                    <  1:429544‑M1/139‑7 (MQ=255)
                                aaaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacacca                                                                                                <  1:160153‑M1/139‑11 (MQ=255)
                                aaaCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacacca                                                                                                <  2:1520396‑M1/139‑11 (MQ=255)
                                  aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaa                                                                                              <  1:1262174‑M1/139‑13 (MQ=255)
                                  aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaa                                                                                              <  2:911572‑M1/139‑13 (MQ=255)
                                  aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcacc                                                                                                      >  1:1701472‑M1/1‑127 (MQ=255)
                                  aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcacc                                                                                                      <  2:1701472‑M1/131‑5 (MQ=255)
                                   ccACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaag                                                                                             <  2:917347‑M1/139‑14 (MQ=255)
                                                   ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCg                                                                                                                  <  2:279463/103‑1 (MQ=255)
                                                   ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCg                                                                                                                  >  1:279463/1‑103 (MQ=255)
                                                   ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcg                                                                             >  1:440252‑M1/1‑110 (MQ=255)
                                                     tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCTCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggt                                                                               >  1:1604794‑M1/1‑108 (MQ=255)
                                                     tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCTCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggt                                                                               <  2:1604794‑M1/135‑28 (MQ=255)
                                                     tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGccatg                                                                                                             >  2:880519/1‑103 (MQ=255)
                                                     tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGccatg                                                                                                             <  1:880519/106‑4 (MQ=255)
                                                     tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGtt                                                                                                          <  1:23357/108‑1 (MQ=255)
                                                     tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGtt                                                                                                          >  2:23357/1‑108 (MQ=255)
                                                     tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacgttacggtcgac                                                                           >  2:1192963‑M1/1‑108 (MQ=255)
                                                     tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgac                                                                           >  2:220867‑M1/1‑108 (MQ=255)
                                                        aGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaa                                                                                              >  2:425877‑M1/1‑105 (MQ=255)
                                                        aGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaa                                                                                              <  1:425877‑M1/117‑13 (MQ=255)
                                                           acaACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgag                                                                     <  1:629671‑M1/139‑38 (MQ=255)
                                                             aaCCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGtt                                                                                                          >  2:1345719/1‑100 (MQ=255)
                                                             aaCCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGtt                                                                                                          <  1:1345719/100‑1 (MQ=255)
                                                             aaCCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaag                                                                                             >  2:853601‑M1/1‑100 (MQ=255)
                                                             aaCCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaag                                                                                             <  1:853601‑M1/113‑14 (MQ=255)
                                                             aaCCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacac                                                                                                  <  1:947502‑M1/108‑9 (MQ=255)
                                                             aaCCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGGCAATCAGACCTCCG‑CCATGTTcaccacac                                                                                                  >  2:947502‑M1/1‑100 (MQ=255)
                                                              aCCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGcc                                                                                                                >  2:711212/1‑94 (MQ=255)
                                                              aCCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGcc                                                                                                                <  1:711212/94‑1 (MQ=255)
                                                               cccAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGcc                                                                                                                <  1:850644/93‑1 (MQ=255)
                                                               cccAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGcc                                                                                                                >  2:850644/1‑93 (MQ=255)
                                                               cccAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccg                                                                 >  2:1511298‑M1/1‑98 (MQ=255)
                                                                ccAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgc                                                                <  1:1511298‑M1/139‑43 (MQ=255)
                                                                    tGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGccat                                                                                                              <  2:905166/90‑3 (MQ=255)
                                                                    tGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGccat                                                                                                              >  1:905166/1‑88 (MQ=255)
                                                                    tGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagc                                                            >  1:616944‑M1/1‑93 (MQ=255)
                                                                     ggCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGCATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagca                                                           <  1:1192963‑M1/139‑48 (MQ=255)
                                                                       cGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacg                                                         <  1:111223‑M1/139‑50 (MQ=255)
                                                                         aTTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc                                                       >  2:635434‑M1/1‑88 (MQ=255)
                                                                         aTTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc                                                       >  1:1801084‑M1/1‑88 (MQ=255)
                                                                         aTTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcga                                                                            <  2:1536862‑M1/118‑31 (MQ=255)
                                                                         aTTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcga                                                                            >  1:1536862‑M1/1‑88 (MQ=255)
                                                                               gTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccg                                                                 >  1:766286‑M1/1‑82 (MQ=255)
                                                                               gTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccg                                                                 <  2:766286‑M1/123‑42 (MQ=255)
                                                                                tCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAg                                                                                                                                 <  2:195511/59‑1 (MQ=255)
                                                                                tCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAg                                                                                                                                 >  1:195511/1‑59 (MQ=255)
                                                                                    catcatA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaa                                            >  2:1431083‑M1/1‑77 (MQ=255)
                                                                                          a‑tCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca                                      <  2:440252‑M1/139‑69 (MQ=255)
                                                                                            tCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaa                                     <  2:1221289‑M1/139‑70 (MQ=255)
                                                                                              cgcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg                                   <  1:220867‑M1/139‑72 (MQ=255)
                                                                                               gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagc                                                            <  2:378596‑M1/113‑47 (MQ=255)
                                                                                               gcgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagc                                                            >  1:378596‑M1/1‑67 (MQ=255)
                                                                                                cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTCAAACTTAGTCAATCAGACCTCCGccat                                                                                                              <  1:1092183/63‑3 (MQ=255)
                                                                                                cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGccac                                                                                                              >  2:1092183/1‑61 (MQ=255)
                                                                                                cgTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggt                                 <  2:616944‑M1/139‑74 (MQ=255)
                                                                                                   ggTTGCTGAACATCGGGATCCAGTTTTGCGGTAAATCTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa                              <  2:1153886‑M1/139‑77 (MQ=255)
                                                                                                    gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa                              <  1:1073660‑M1/138‑77 (MQ=255)
                                                                                                    gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa                              >  2:1073660‑M1/1‑62 (MQ=255)
                                                                                                     ttGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag                                        <  2:794408‑M1/127‑67 (MQ=255)
                                                                                                     ttGCTGAACATCGGGATCCAGTTTTGAGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag                                        >  1:794408‑M1/1‑61 (MQ=255)
                                                                                                               tCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca                                      >  2:1809488‑M1/1‑51 (MQ=255)
                                                                                                               tCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca                                      <  1:1809488‑M1/119‑69 (MQ=255)
                                                                                                               tCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag                                        >  2:1714827‑M1/1‑51 (MQ=255)
                                                                                                               tCGGGATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag                                        <  1:1714827‑M1/117‑67 (MQ=255)
                                                                                                                  ggATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGcc                                                                                                                <  2:1749572/43‑1 (MQ=255)
                                                                                                                  ggATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCGcc                                                                                                                >  1:1749572/1‑43 (MQ=255)
                                                                                                                  ggATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgcctgcacggc                                                       <  1:1202565‑M1/99‑52 (MQ=255)
                                                                                                                  ggATCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc                                                       >  2:1202565‑M1/1‑48 (MQ=255)
                                                                                                                     tCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCaaa                                                                                           <  1:1428382/57‑1 (MQ=255)
                                                                                                                     tCCAGTTTTGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCaaa                                                                                           >  2:1428382/1‑57 (MQ=255)
                                                                                                                          ttttGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag       >  1:283317‑M1/1‑40 (MQ=255)
                                                                                                                          ttttGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccag       <  1:1431083‑M1/139‑100 (MQ=255)
                                                                                                                          ttttGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg                                   <  1:757313‑M1/111‑72 (MQ=255)
                                                                                                                          ttttGCGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacg                                   >  2:757313‑M1/1‑40 (MQ=255)
                                                                                                                               cGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggc                                                                   <  1:332943‑M1/74‑40 (MQ=255)
                                                                                                                               cGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggc                                                                   >  2:332943‑M1/1‑35 (MQ=255)
                                                                                                                               cGGTAAAACTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagagacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt  >  1:1132126‑M1/1‑35 (MQ=255)
                                                                                                                                 gTAAAACTTAGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAAGAGATACa                                                                                   >  1:885782/1‑53 (MQ=255)
                                                                                                                                 gTAAAACTTAGTCAATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAAGAGATACa                                                                                   <  2:885782/53‑1 (MQ=255)
                                                                                                                                    aaaCTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc                                                       <  1:411355‑M1/81‑52 (MQ=255)
                                                                                                                                    aaaCTTAGTCAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc                                                       >  2:411355‑M1/1‑30 (MQ=255)
                                                                                                                                        |                                                                                                                                  
GCACATGTTGAACTGCAGAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATA‑TCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTCAATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCG  >  NC_000913/3862362‑3862627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A