Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F1 I1 R1 760 58.2 3022526 90.8% 2744453 102.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,862,518 Δ1 bp pseudogene (1086/1617 nt) glvC ← pseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,862,5160C.100.0% 302.4 / NA 73pseudogene (1088/1617 nt)glvCpseudogene, arbutin specific enzyme IIC component of PTS,enzyme, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system, arbutin‑like IIB component, PTS system, arbutin‑like IIC component
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (36/37);  total (36/37)

GAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTC‑AATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCA  >  NC_000913/3862379‑3862648
                                                                                                                                          |                                                                                                                                    
gAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCGcc                                                                                                                                     <  2:510168/139‑1 (MQ=255)
       tgtgCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTca                                                                                                                             >  1:1324331‑M1/1‑137 (MQ=255)
                 aCCACGAAGTACAGCAGGGTAAAGCACGACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaa                                                                                                                   <  1:300345‑M1/139‑13 (MQ=255)
                 aCCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaa                                                                                                                   >  2:960458‑M1/1‑127 (MQ=255)
                            cagcagGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacacaaaagagatacatta                                                                                                        <  2:562180‑M1/139‑24 (MQ=255)
                                agGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggt                                                                                                    <  1:60225‑M1/139‑28 (MQ=255)
                                  ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacatta                                                                                                        >  1:365109‑M1/1‑110 (MQ=255)
                                  ggTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacatta                                                                                                        <  2:365109‑M1/133‑24 (MQ=255)
                                    tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgac                                                                                                >  2:650806‑M1/1‑108 (MQ=255)
                                    tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgac                                                                                                >  2:1155715‑M1/1‑108 (MQ=255)
                                    tAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgac                                                                                                >  2:728993‑M1/1‑108 (MQ=255)
                                       aGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacatt                                                                                             >  2:1040407‑M1/1‑105 (MQ=255)
                                          acaACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTtaccacaccaaagagatacattacggtcgacattgag                                                                                          <  1:960458‑M1/139‑38 (MQ=255)
                                            aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcacca                                                                                                                          >  2:962798‑M1/1‑100 (MQ=255)
                                            aaCCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcacca                                                                                                                          <  1:962798‑M1/105‑6 (MQ=255)
                                                 aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagataca                                                                                                           <  2:1261991‑M1/115‑21 (MQ=255)
                                                 aaTGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagataca                                                                                                           >  1:1261991‑M1/1‑95 (MQ=255)
                                                   tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagc                                                                                 >  1:62528‑M1/1‑93 (MQ=255)
                                                   tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagaga                                                                                                               >  1:844279‑M1/1‑93 (MQ=255)
                                                   tGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagaga                                                                                                               <  2:844279‑M1/109‑17 (MQ=255)
                                                    ggCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagca                                                                                <  2:62528‑M1/139‑48 (MQ=255)
                                                      cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacg                                                                              <  1:1040407‑M1/139‑50 (MQ=255)
                                                      cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacac                                                                                                                       <  1:851458‑M1/98‑9 (MQ=255)
                                                      cGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacac                                                                                                                       >  2:851458‑M1/1‑90 (MQ=255)
                                                        aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTATTC‑AATCAGACCTCCG‑TCATGTTcagcacaccaaggagatacattacagtcgacattgaggccggcagcacggc                                                                            <  2:802842‑M1/139‑52 (MQ=255)
                                                        aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc                                                                            >  1:771509‑M1/1‑88 (MQ=255)
                                                        aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagc                                                                                 <  1:509079‑M1/134‑47 (MQ=255)
                                                        aTTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagc                                                                                 >  2:509079‑M1/1‑88 (MQ=255)
                                                           tGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtg                                                                         <  2:342931‑M1/139‑55 (MQ=255)
                                                             ggTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgta                                                                       <  2:771509‑M1/139‑57 (MQ=255)
                                                               tCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacg                                                                              <  1:1378103‑M1/130‑50 (MQ=255)
                                                               tCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacg                                                                              >  2:1378103‑M1/1‑81 (MQ=255)
                                                                       atatCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacag                                                             <  2:1150286‑M1/139‑67 (MQ=255)
                                                                         atCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagca                                                           <  1:728993‑M1/139‑69 (MQ=255)
                                                                                  gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaa                                                  >  2:914278‑M1/1‑62 (MQ=255)
                                                                                  gTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaa                                                  >  2:438010‑M1/1‑62 (MQ=255)
                                                                                       tGAACATCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaac                                             <  2:375236‑M1/139‑83 (MQ=255)
                                                                                           cATCTGGATCCAGTTTTGCGGTAAAACTTAGTCAAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacgg                                                                                                     <  2:968886‑M1/80‑27 (MQ=255)
                                                                                           cATCGGGATCCAGTTTTGCGGTAAAACTTAGTCAAATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacgg                                                                                                     >  1:968886‑M1/1‑54 (MQ=255)
                                                                                             tCGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaag                                       >  1:500218‑M1/1‑51 (MQ=255)
                                                                                              cGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaagg                                      >  2:1121206‑M1/1‑50 (MQ=255)
                                                                                              cGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc                                                                            <  2:401791‑M1/101‑52 (MQ=255)
                                                                                              cGGGATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggc                                                                            >  1:401791‑M1/1‑50 (MQ=255)
                                                                                                ggATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAAGAGATa                                                                                                          <  1:1406891/66‑1 (MQ=255)
                                                                                                ggATCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAAGAGATa                                                                                                          >  2:1406891/1‑66 (MQ=255)
                                                                                                   tCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGttca                                                                                                                             <  1:595615/47‑3 (MQ=255)
                                                                                                   tCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGttca                                                                                                                             >  2:595615/1‑45 (MQ=255)
                                                                                                   tCCAGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaat                                 >  2:1267430‑M1/1‑45 (MQ=255)
                                                                                                      aGTTTTGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattcc                              <  1:1155715‑M1/139‑98 (MQ=255)
                                                                                                        ttttGCGGCAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCaaa                                                                                                                <  2:81121/52‑1 (MQ=255)
                                                                                                        ttttGCGGCAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCaaa                                                                                                                >  1:81121/1‑52 (MQ=255)
                                                                                                           tGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg                         <  1:438010‑M1/139‑103 (MQ=255)
                                                                                                           tGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcgg                         >  1:440127‑M1/1‑37 (MQ=255)
                                                                                                           tGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacacca                                                                                                                     >  2:933801/1‑43 (MQ=255)
                                                                                                           tGCGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacacca                                                                                                                     <  1:933801/47‑5 (MQ=255)
                                                                                                             cGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggtt                       >  1:780603‑M1/1‑35 (MQ=255)
                                                                                                             cGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa                                              <  2:53208‑M1/116‑82 (MQ=255)
                                                                                                             cGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaa                                              >  1:53208‑M1/1‑35 (MQ=255)
                                                                                                             cGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa                                                                >  1:254895‑M1/1‑35 (MQ=255)
                                                                                                             cGGTAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaa                                                                <  2:254895‑M1/98‑64 (MQ=255)
                                                                                                                tAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg                    <  2:1118766‑M1/139‑108 (MQ=255)
                                                                                                                tAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg                    <  1:1267430‑M1/139‑108 (MQ=255)
                                                                                                                tAAAACTTAGTC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcgg                    >  1:1118766‑M1/1‑32 (MQ=255)
                                                                                                                       tAGTC‑AATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAag                                                                                                               >  2:1085533/1‑38 (MQ=255)
                                                                                                                       tAGTC‑AATCAGACCTCCG‑CCATGTT‑‑‑CACCACACCAAag                                                                                                               <  1:1085533/38‑1 (MQ=255)
                                                                                                                          tC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa                                                   <  2:485786‑M1/98‑77 (MQ=255)
                                                                                                                          tC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaa                                                   >  1:485786‑M1/1‑22 (MQ=255)
                                                                                                                          tC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcac                                                                               <  2:193149‑M1/70‑49 (MQ=255)
                                                                                                                          tC‑AATCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcac                                                                               >  1:193149‑M1/1‑22 (MQ=255)
                                                                                                                               tCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccac          <  2:491332‑M1/135‑118 (MQ=255)
                                                                                                                               tCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccac          >  1:491332‑M1/1‑18 (MQ=255)
                                                                                                                               tCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattccc            <  2:588558‑M1/133‑116 (MQ=255)
                                                                                                                               tCAGACCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattccc            >  1:588558‑M1/1‑18 (MQ=255)
                                                                                                                                   aCCTCCG‑CCATGTTcaccacaccaaagagatacattacggtcgacattgaggccgccagcacggcgtgtaccgcaaacagcaacggtgaaatgaacaggaaggtaaattccagcggttcggtaattcccaccagcatgg  <  2:780603‑M1/139‑126 (MQ=255)
                                                                                                                                          |                                                                                                                                    
GAATCAGTGTGCGGAAAACCACGAAGTACAGCAGGGTAAAGCACAACCCAATGGCGATTTGGGTCAGCATCATATCCGCGTGGTTGCTGAACATCGGGATCCAGTTTTGCGGTAAAACCTAGTC‑AATCAGACCTCCGCCCATGTTGCCCACCACACCAAAGAGATACATTACGGTCGACATTGAGGCCGCCAGCACGGCGTGTACCGCAAACAGCAACGGTGAAATGAACAGGAAGGTAAATTCCAGCGGTTCGGTAATTCCCACCAGCA  >  NC_000913/3862379‑3862648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A