Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
765 |
46.1 |
2269152 |
93.8% |
2128464 |
105.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,081,989 |
G→A |
G26E (GGA→GAA) |
loiP → |
Phe‑Phe periplasmic metalloprotease, OM lipoprotein, low salt‑inducible, Era‑binding heat shock protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,081,989 | 0 | G | A | 100.0%
| 210.1
/ NA
| 64 | G26E (GGA→GAA) | loiP | Phe‑Phe periplasmic metalloprotease, OM lipoprotein, low salt‑inducible, Era‑binding heat shock protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (30/34); total (30/34) |
ATTCACCTGCAAACGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTA > NC_000913/3081855‑3082123
|
aTTCACCTGCAAACGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTg < 2:305530/139‑1 (MQ=255)
tCACCTGCAAACGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGct < 1:1077048/139‑1 (MQ=255)
tCACCTGCAAACGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGct < 2:641095/139‑1 (MQ=255)
tCACCTGCAAACGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGct < 1:552774/139‑1 (MQ=255)
ccTGCAAACGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCtctc > 2:1127903/1‑139 (MQ=255)
cTGCAAACGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCtca < 2:787384/139‑1 (MQ=255)
aaCGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAgg > 1:296258/1‑139 (MQ=255)
aTTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAg > 1:1042152/1‑139 (MQ=255)
tttAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCtt > 2:156080/1‑139 (MQ=255)
tAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCtttt < 2:296258/139‑1 (MQ=255)
tAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCtttt < 1:156080/139‑1 (MQ=255)
gAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCa < 1:866539/139‑1 (MQ=255)
aatCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCt < 2:1019081/139‑1 (MQ=255)
atCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCtt < 2:123376/139‑1 (MQ=255)
gACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGt < 2:722666/139‑1 (MQ=255)
tgtgCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAg > 2:1083419/1‑139 (MQ=255)
tgtgCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAg > 1:434759/1‑139 (MQ=255)
gtgCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCtcatc > 1:467033/1‑105 (MQ=255)
gtgCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCtcatc < 2:467033/105‑1 (MQ=255)
gtgCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAgg > 1:500108/1‑125 (MQ=255)
gtgCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAgg < 2:500108/125‑1 (MQ=255)
gtacGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCtcatc > 2:811974/4‑105 (MQ=255)
gtacGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCtcatc < 1:811974/102‑1 (MQ=255)
tgCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTg > 2:825070/1‑96 (MQ=255)
tgCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTg < 1:825070/96‑1 (MQ=255)
tgCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTg > 2:214923/1‑139 (MQ=255)
ggAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGacg < 1:1127436/139‑3 (MQ=255)
aaGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGAcgcg > 2:415712/1‑139 (MQ=255)
aaGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGAcgcg < 1:415712/139‑1 (MQ=255)
aCATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGaa < 2:1042152/139‑1 (MQ=255)
aTGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACT‑GTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAg < 1:844377/90‑1 (MQ=255)
aTGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACT‑GTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAg > 2:844377/1‑90 (MQ=255)
gAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAAcc > 2:1132371/1‑139 (MQ=255)
tATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAgg < 2:457413/138‑1 (MQ=255)
tATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAgg > 1:457413/1‑138 (MQ=255)
gTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTc < 1:1127903/139‑1 (MQ=255)
gCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGacg < 1:822823/103‑3 (MQ=255)
gCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGacg > 2:822823/1‑101 (MQ=255)
aaTGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGacg > 2:37400/1‑99 (MQ=255)
aaTGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGacg < 1:37400/101‑3 (MQ=255)
aaTGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGgag > 1:797977/1‑139 (MQ=255)
tGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCg > 2:95321/1‑68 (MQ=255)
tGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCg < 1:95321/68‑1 (MQ=255)
aGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGc < 1:1021908/125‑1 (MQ=255)
aGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGc > 2:1021908/1‑125 (MQ=255)
cGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTAACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGAc > 2:687916/1‑139 (MQ=255)
ggCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCtcatc > 1:492660/1‑54 (MQ=255)
ggCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCtcatc < 2:492660/54‑1 (MQ=255)
cGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTg < 2:877285/104‑1 (MQ=255)
cGGTACTGACTGGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTg > 1:877285/1‑104 (MQ=255)
ctgactgGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCa > 1:792449/1‑62 (MQ=255)
ctgactgGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCa < 2:792449/62‑1 (MQ=255)
gactgGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAAcc < 2:243677/94‑1 (MQ=255)
gactgGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAAcc > 1:243677/1‑94 (MQ=255)
tgGTTGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTgcg < 1:1083419/139‑1 (MQ=255)
ttGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAgg > 2:919633/1‑101 (MQ=255)
ttGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAgg < 1:919633/101‑1 (MQ=255)
ttGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATg < 2:153083/115‑1 (MQ=255)
ttGCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATg > 1:153083/1‑115 (MQ=255)
gCCAGAATATGGACTCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCgccagc < 1:263253/139‑1 (MQ=255)
tCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAg < 1:737749/93‑1 (MQ=255)
tCCAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAg > 2:737749/1‑93 (MQ=255)
ccAACGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGc > 1:8810/1‑139 (MQ=255)
aaCGAACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGACGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTa > 2:207589/1‑139 (MQ=255)
|
ATTCACCTGCAAACGGCGCATTTTTAGAATAATCCTGACCTTGTGCGGAAGAGAAAACATGAAAATTCGCGCCTTATTGGTAGCAATGAGCGTGGCAACGGTACTGACTGGTTGCCAGAATATGGACTCCAACGGACTGCTCTCATCAGGAGCGGAAGCTTTTCAGGCTTACAGTTTGAGTGATGCGCAGGTGAAAACCCTGAGCGATCAGGCATGTCAGGAGATGGACAGCAAGGCGACGATTGCGCCAGCCAATAGCGAATACGCTA > NC_000913/3081855‑3082123
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
