Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F1 I1 R1 778 68.7 3228504 93.4% 3015422 109.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,056,064 G→A noncoding (82/183 nt) ssrS → 6S RNA inhibits RNA polymerase promoter binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,056,0640GA100.0% 257.2 / NA 78noncoding (82/183 nt)ssrS6S RNA inhibits RNA polymerase promoter binding
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (41/37);  total (41/37)

TGAATGACACTTTTCGGTTTACTGTGGTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTGAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCTGGCACCAGCCATGACG  >  NC_000913/3055935‑3056192
                                                                                                                                 |                                                                                                                                
tGAATGACACTTTTCGGTTTACTGTGGTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTc                                                                                                                         >  2:137304/1‑139 (MQ=255)
            ttCGGTTTACTGTGGTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCgag                                                                                                             >  1:78645/1‑139 (MQ=255)
                  ttACTGTGGTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCTGTCCGTCCGAGAAGCCt                                                                                                       <  2:1005652/139‑1 (MQ=255)
                    aCTGTGGTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTa                                                                                                     >  1:1097053/1‑139 (MQ=255)
                      tgtgGTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTaaa                                                                                                   <  1:1027578/139‑1 (MQ=255)
                      tgtgGTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTaaa                                                                                                   >  2:776703/1‑139 (MQ=255)
                      tgtgGTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTaaa                                                                                                   <  2:235290/139‑1 (MQ=255)
                        tgGTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAAc                                                                                                 >  2:652049/1‑139 (MQ=255)
                          gTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTaa                                                                                                    <  2:8342/134‑1 (MQ=255)
                          gTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTaa                                                                                                    >  1:8342/1‑134 (MQ=255)
                          gTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTg                                                                                               >  1:1100120/1‑139 (MQ=255)
                           tAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGc                                                                                              >  2:120101/1‑139 (MQ=255)
                              agTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGcgac                                                                                           <  1:1112305/139‑1 (MQ=255)
                              agTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGcgac                                                                                           <  1:1331051/139‑1 (MQ=255)
                               gTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGcgacg                                                                                          >  2:731877/1‑139 (MQ=255)
                                  aCCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGaca                                                                                       <  1:652049/139‑1 (MQ=255)
                                    cGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGcg                                                                                             <  2:143589/131‑1 (MQ=255)
                                    cGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGcg                                                                                             >  1:143589/1‑131 (MQ=255)
                                     gTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGTATGCTCGGTCCGTCCGAGAAGCCTTaaa                                                                                                   >  2:683395/1‑124 (MQ=255)
                                     gTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGTATGCTCGGTCCGTCCGAGAAGCCTTaaa                                                                                                   <  1:683395/124‑1 (MQ=255)
                                     gTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACAt                                                                                    >  1:694549/1‑139 (MQ=255)
                                     gTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACAt                                                                                    <  2:1018664/139‑1 (MQ=255)
                                     gTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACAt                                                                                    <  2:78645/139‑1 (MQ=255)
                                      tGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACAtt                                                                                   <  2:115862/139‑1 (MQ=255)
                                          gACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCAcc                                                                               <  2:3806/139‑1 (MQ=255)
                                           aCAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCt                                                                              <  2:1097053/139‑1 (MQ=255)
                                              aaaTTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGa                                                                           <  1:853881/139‑1 (MQ=255)
                                              aaaTTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGa                                                                           <  1:759065/139‑1 (MQ=255)
                                                       tGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACcaagggt                                                                  >  1:1348129/1‑139 (MQ=255)
                                                           aTGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACcaagggttcaa                                                              >  2:1469862/1‑139 (MQ=255)
                                                              ttCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGgtc                                                                                                                     <  1:904592/81‑1 (MQ=255)
                                                              ttCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGgtc                                                                                                                     >  2:904592/1‑81 (MQ=255)
                                                                        ggCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTg                                                 >  1:1284900/1‑139 (MQ=255)
                                                                          ccAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACAtt                                                                                   >  1:209769/1‑103 (MQ=255)
                                                                          ccAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACAtt                                                                                   <  2:209769/103‑1 (MQ=255)
                                                                             gTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTgcggcg                                            <  2:694549/139‑1 (MQ=255)
                                                                             gTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTgcggcg                                            <  2:1348129/139‑1 (MQ=255)
                                                                              tCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGcgacga                                                                                         >  1:1308136/1‑93 (MQ=255)
                                                                              tCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGcgacga                                                                                         <  2:1308136/93‑1 (MQ=255)
                                                                              tCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGcggcgg                                           <  1:137304/139‑1 (MQ=255)
                                                                                   tGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCAtct                                      >  1:642922/1‑139 (MQ=255)
                                                                                     aGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAGAACTGCGACGACACATTCACCTTGAACcaagggttcaaggtgaatgt                                                     <  1:1548302/122‑8 (MQ=255)
                                                                                     aGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACcaagggttcaaggtgaatgt                                                     >  2:1548302/1‑115 (MQ=255)
                                                                                          atatTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGAt                               >  2:759829/1‑139 (MQ=255)
                                                                                          atatTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGAt                               >  2:835163/1‑139 (MQ=255)
                                                                                          atatTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGAt                               >  2:191614/1‑139 (MQ=255)
                                                                                            atTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTc                             <  2:642922/139‑1 (MQ=255)
                                                                                                 aTACCACAAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCcttc                        >  2:18677/1‑139 (MQ=255)
                                                                                                     cacaAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTAt                    <  1:18677/139‑1 (MQ=255)
                                                                                                       caAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACAtt                                                                                   <  2:433819/74‑1 (MQ=255)
                                                                                                       caAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACAtt                                                                                   >  1:433819/1‑74 (MQ=255)
                                                                                                       caAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACcaa                                                                      <  1:1128271/87‑1 (MQ=255)
                                                                                                       caAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACcaa                                                                      >  2:1128271/1‑87 (MQ=255)
                                                                                                       caAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCggcggc                                          >  1:1032575/1‑115 (MQ=255)
                                                                                                       caAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCggcggc                                          <  2:1032575/115‑1 (MQ=255)
                                                                                                       caAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCt                  >  2:784258/1‑139 (MQ=255)
                                                                                                       caAGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCt                  >  1:397473/1‑139 (MQ=255)
                                                                                                        aaGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTgcgg                                              >  1:1129991/1‑110 (MQ=255)
                                                                                                        aaGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTgcgg                                              <  2:1129991/110‑1 (MQ=255)
                                                                                                        aaGAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCTg                 >  2:751709/1‑139 (MQ=255)
                                                                                                          gAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCggcggc                                          <  1:345745/112‑1 (MQ=255)
                                                                                                          gAATGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCggcggc                                          >  2:345745/1‑112 (MQ=255)
                                                                                                           aaTGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCTGGCa              <  1:191614/139‑1 (MQ=255)
                                                                                                            aTGTGGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCTGGCAc             <  1:776703/139‑1 (MQ=255)
                                                                                                             tgtgGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACcaagggttc                                                                >  1:1050114/1‑87 (MQ=255)
                                                                                                             tgtgGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACcaagggttc                                                                <  2:1050114/87‑1 (MQ=255)
                                                                                                             tgtgGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCTGGCAcc            >  2:72679/1‑139 (MQ=255)
                                                                                                               tgGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCt                                                                              <  1:1185983/71‑1 (MQ=255)
                                                                                                               tgGCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCt                                                                              >  2:1185983/1‑71 (MQ=255)
                                                                                                                ggCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCgaga                                                                                                            >  1:126247/1‑40 (MQ=255)
                                                                                                                ggCGCTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCgaga                                                                                                            <  2:126247/40‑1 (MQ=255)
                                                                                                                  cgcTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCt                                                                                                       <  1:1142445/43‑1 (MQ=255)
                                                                                                                  cgcTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCt                                                                                                       >  2:1142445/1‑43 (MQ=255)
                                                                                                                  cgcTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCTGGCACCAGCCa       >  1:1223875/1‑139 (MQ=255)
                                                                                                                    cTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGcgacga                                                                                         >  2:1479734/1‑55 (MQ=255)
                                                                                                                    cTCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGcgacga                                                                                         <  1:1479734/55‑1 (MQ=255)
                                                                                                                     tCCGCGGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCTGGCACCAGCCATGa    >  1:676294/1‑139 (MQ=255)
                                                                                                                       cgcgGTTGGTAAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCTGGCACCAGCCATGACg  >  1:1329539/1‑139 (MQ=255)
                                                                                                                                 |                                                                                                                                
TGAATGACACTTTTCGGTTTACTGTGGTAGAGTAACCGTGAAGACAAAATTTCTCTGAGATGTTCGCAAGCGGGCCAGTCCCCTGAGCCGATATTTCATACCACAAGAATGTGGCGCTCCGCGGTTGGTGAGCATGCTCGGTCCGTCCGAGAAGCCTTAAAACTGCGACGACACATTCACCTTGAACCAAGGGTTCAAGGGTTACAGCCTGCGGCGGCATCTCGGAGATTCCCTTCTTATCTGGCACCAGCCATGACG  >  NC_000913/3055935‑3056192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A