Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F1 I1 R1	778	68.7	3228504	93.4%	3015422	109.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,208,107	G→A	G28G (GGG→GGA)	ttdT →	L‑tartrate/succinate antiporte

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,208,107	0	G	A	98.7%	253.8 / ‑5.4	79	G28G (GGG→GGA)	ttdT	L‑tartrate/succinate antiporte
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (35/43); minor base T (1/0); total (36/43)
Fisher's exact test for biased strand distribution p-value = 4.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AATAACCCTCCCGGAGAGGCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGGCTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGATGGTGGGTATATCCATCATCGCCATACTCTCTCCCTGGCTG  >  NC_000913/3207972‑3208239

aaTAACCCTCCCGGAGAGGCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTg                                                                                                                                   >  1:1410558/1‑139 (MQ=255)

        tCCCGGAGAGGCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCa                                                                                                                           >  2:791992/1‑139 (MQ=255)

         cccGGAGAGGCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCAt                                                                                                                          >  1:600333/1‑139 (MQ=255)

         cccGGAGAGGCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCAt                                                                                                                          >  1:535843/1‑139 (MQ=255)

          ccGGAGAGGCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATa                                                                                                                         <  2:535843/139‑1 (MQ=255)

            ggAGAGGCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATAcc                                                                                                                       <  1:494817/139‑1 (MQ=255)

                  gCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGctc                                                                                                                 >  1:1197817/1‑139 (MQ=255)

                  gCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGctc                                                                                                                 >  1:216439/1‑139 (MQ=255)

                            ctcCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTgg                                                                                                                                  >  2:365258/1‑112 (MQ=255)

                            ctcCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTgg                                                                                                                                  <  1:365258/112‑1 (MQ=255)

                            ctcCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTg                                                                                                                                   <  1:1470678/111‑1 (MQ=255)

                            ctcCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTg                                                                                                                                   >  2:1470678/1‑111 (MQ=255)

                                  tttCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATAc                                                                                                                        >  1:425234/1‑116 (MQ=255)

                                  tttCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATAc                                                                                                                        <  2:425234/116‑1 (MQ=255)

                                  tttCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTa                                                                                                 >  1:1286785/1‑139 (MQ=255)

                                         ggCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGt                                                                                          <  2:82345/139‑1 (MQ=255)

                                              aaCACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCg                                                                                     <  2:326185/139‑1 (MQ=255)

                                              aaCACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCg                                                                                     <  2:611467/139‑1 (MQ=255)

                                              aaCACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCg                                                                                     <  2:520803/139‑1 (MQ=255)

                                                    aTGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGt                                                                                          >  2:440384/1‑128 (MQ=255)

                                                    aTGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGt                                                                                          <  1:440384/128‑1 (MQ=255)

                                                     tGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACt                                                                              >  1:472970/1‑139 (MQ=255)

                                                     tGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACt                                                                              <  1:791992/139‑1 (MQ=255)

                                                     tGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACt                                                                              >  2:245886/1‑139 (MQ=255)

                                                      gAAACCTTCCACTGACTGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTg                                                                             <  2:1078522/139‑1 (MQ=255)

                                                      gAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTg                                                                             <  2:600333/139‑1 (MQ=255)

                                                        aaCCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTa                                                                                                 <  2:705902/117‑1 (MQ=255)

                                                        aaCCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTa                                                                                                 >  1:705902/1‑117 (MQ=255)

                                                          ccTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATcc                                                                         >  2:1571616/1‑139 (MQ=255)

                                                           cTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTAGGACTGATCCt                                                                        >  2:1043457/1‑139 (MQ=255)

                                                                aCTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAAc                                                                   <  2:472970/139‑1 (MQ=255)

                                                                  tGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAAccc                                                                 <  1:1415779/139‑1 (MQ=255)

                                                                    aaTGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGt                                                               >  2:1502349/1‑139 (MQ=255)

                                                                    aaTGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGt                                                               >  2:327342/1‑139 (MQ=255)

                                                                       ggtggCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGcc                                                            <  1:1043457/139‑1 (MQ=255)

                                                                         tggCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCgg                                                          >  1:617526/1‑139 (MQ=255)

                                                                           gCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGt                                                        >  1:385827/1‑139 (MQ=255)

                                                                            cGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGt                                                                                          <  1:735412/104‑1 (MQ=255)

                                                                            cGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGt                                                                                          >  2:735412/1‑104 (MQ=255)

                                                                            cGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTg                                                       <  2:1410558/139‑1 (MQ=255)

                                                                              atatCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGt                                                                                          <  1:506706/102‑1 (MQ=255)

                                                                              atatCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGt                                                                                          >  2:506706/1‑102 (MQ=255)

                                                                              atatCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGcc                                                     >  1:961770/1‑139 (MQ=255)

                                                                                atCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCgt                                                   <  1:1502349/139‑1 (MQ=255)

                                                                                     gcgcCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGtggtgg                                              <  2:617526/139‑1 (MQ=255)

                                                                                      cgccgcTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGc                                             <  2:55173/139‑1 (MQ=255)

                                                                                       gccgcTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGa                                                                            <  2:515241/107‑1 (MQ=255)

                                                                                       gccgcTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGa                                                                            >  1:515241/1‑107 (MQ=255)

                                                                                       gccgcTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCg                                            <  2:385827/139‑1 (MQ=255)

                                                                                       gccgcTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCg                                            <  2:785592/139‑1 (MQ=255)

                                                                                       gccgcTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTCCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCg                                            <  1:113200/139‑1 (MQ=255)

                                                                                           cTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTAc                                                                                                >  2:1052821/1‑83 (MQ=255)

                                                                                           cTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtgg                                        >  1:1167844/1‑139 (MQ=255)

                                                                                           cTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtgg                                        >  2:665365/1‑139 (MQ=255)

                                                                                           cTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtgg                                        <  1:327342/139‑1 (MQ=255)

                                                                                           cTGGCGGTCATCGCCATTATGGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCATTTTTAc                                                                                                <  1:1052821/83‑1 (MQ=255)

                                                                                            tGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtggt                                       <  2:1167844/139‑1 (MQ=255)

                                                                                              gCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCg                                                                                     <  1:42388/91‑1 (MQ=255)

                                                                                              gCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCg                                                                                     >  2:42388/1‑91 (MQ=255)

                                                                                              gCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtggtgg                                     <  1:665365/139‑1 (MQ=255)

                                                                                              gCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtggtgg                                     <  2:1286785/139‑1 (MQ=255)

                                                                                                        ccATTATTGCTCTACTTCCGGTTCCCGCAGGACTGGAGAACCATACCCGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGATGGTGGGTATATCcat                           <  2:961770/139‑1 (MQ=255)

                                                                                                                   ctACTTCCGGTTCCCGCAGGTCTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTg                                                                             >  1:948819/1‑78 (MQ=255)

                                                                                                                   ctACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTg                                                                             <  2:948819/78‑1 (MQ=255)

                                                                                                                   ctACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtgg                                        >  1:863159/1‑115 (MQ=255)

                                                                                                                   ctACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtgg                                        <  2:1521887/115‑1 (MQ=255)

                                                                                                                   ctACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtgg                                        <  2:420735/115‑1 (MQ=255)

                                                                                                                   ctACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtgg                                        >  1:420735/1‑115 (MQ=255)

                                                                                                                   ctACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtgg                                        <  2:863159/115‑1 (MQ=255)

                                                                                                                   ctACTTCCGGTTCCCGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGAtgg                                        >  1:1521887/1‑115 (MQ=255)

                                                                                                                         ccGGTTCCCGCAGGACTGGAGAACCATACCTGGct                                                                                                                  <  1:746433/35‑1 (MQ=255)

                                                                                                                         ccGGTTCCCGCAGGACTGGAGAACCATACCTGGct                                                                                                                  >  2:746433/1‑35 (MQ=255)

                                                                                                                                ccGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGa                                           <  2:1500388/99‑1 (MQ=255)

                                                                                                                                ccGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGa                                           >  1:1500388/1‑99 (MQ=255)

                                                                                                                                ccGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGATGGTGGGTATATCcatca                         <  2:1458291/117‑1 (MQ=255)

                                                                                                                                ccGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGATGGTGGGTATATCcatca                         >  1:1458291/1‑117 (MQ=255)

                                                                                                                                ccGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGATGGTGGGTATATCCATCATCGCCATACTCTCTCCCTGgct   >  1:159830/1‑139 (MQ=255)

                                                                                                                                ccGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGATGGTGGGTATATCCATCATCGCCATACTCTCTCCCTGgct   >  1:862085/1‑139 (MQ=255)

                                                                                                                                 cGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGATGGTGGGTATATCCATCATCGCCATACTCTCTCCCTGgctg  <  1:1571616/139‑1 (MQ=255)

                                                                                                                                 cGCAGGACTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGATGGTGGGTATATCCATCATCGCCATACTCTCTCCCTGgctg  <  2:159830/139‑1 (MQ=255)

AATAACCCTCCCGGAGAGGCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTTGCGCCGCTGGCGGTCATCGCCATTATTGCTCTACTTCCGGTTCCCGCAGGGCTGGAGAACCATACCTGGCTCTACTTTGCCGTTTTTACTGGCGTGATCGTTGGACTGATCCTCGAACCCGTGCCGGGTGCCGTGGTGGCGATGGTGGGTATATCCATCATCGCCATACTCTCTCCCTGGCTG  >  NC_000913/3207972‑3208239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A