Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F1 I1 R1 781 46.9 2231650 93.5% 2086592 109.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,857,142 7 bp→GATAGTC coding (50‑56/2562 nt) mutS → methyl‑directed mismatch repair protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2857142 2857148 7 33 [0] [0] 33 mutS methyl‑directed mismatch repair protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 28571410 (0.000)31 (0.690)
+GATAGTC		 22/202 0.8 100% coding (49/2562 nt) mutS methyl‑directed mismatch repair protein
?NC_000913 2857149 = 0 (0.000)coding (57/2562 nt) mutS methyl‑directed mismatch repair protein

GATK/CNVnator alignment

N/A