Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F1 I2 R1 774 49.2 2112398 96.9% 2046913 118.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,045,107 T→C intergenic (+6/+51) bglA → / ← ygfF 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,045,1070TC100.0% 262.0 / NA 72intergenic (+6/+51)bglA/ygfF6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/32);  total (40/32)

GTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACTTAGTAGCCAGACAATGGCCTGCGCGA  >  NC_000913/3044972‑3045240
                                                                                                                                       |                                                                                                                                     
gTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGaa                                                                                                                                    <  2:177346/139‑1 (MQ=255)
     gCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTAcc                                                                                                                               <  1:843306/139‑1 (MQ=255)
        aaCGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGa                                                                                                                            <  2:854344/139‑1 (MQ=255)
                     tATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACttgtt                                                                                                               >  1:104780/1‑139 (MQ=255)
                       tCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTAcc                                                                                                                               <  2:456965/121‑1 (MQ=255)
                       tCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTAcc                                                                                                                               >  1:456965/1‑121 (MQ=255)
                         tATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCAt                                                                                                           >  1:714821/1‑139 (MQ=255)
                           tgtgAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATcc                                                                                                         <  2:104780/139‑1 (MQ=255)
                            gtgAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCg                                                                                                        >  1:149378/1‑139 (MQ=255)
                               aaTAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTc                                                                                                     >  2:333691/1‑139 (MQ=255)
                               aaTAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTc                                                                                                     >  2:802561/1‑139 (MQ=255)
                               aaTAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTc                                                                                                     >  2:861770/1‑139 (MQ=255)
                                     cATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACaa                                                                                               >  1:329782/1‑139 (MQ=255)
                                     cATGACGACGGTACTGGCGATAGGTCGCGTTCACGTCAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACaa                                                                                               <  1:663297/139‑1 (MQ=255)
                                         acgacgGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCaa                                                                                                                       <  2:202942/111‑1 (MQ=255)
                                         acgacgGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCaa                                                                                                                       >  1:202942/1‑111 (MQ=255)
                                             cgGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTg                                                                                       >  1:629542/1‑139 (MQ=255)
                                              ggTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGc                                                                                                                         <  1:37725/104‑1 (MQ=255)
                                              ggTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGc                                                                                                                         >  2:37725/1‑104 (MQ=255)
                                              ggTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGt                                                                                      >  1:565201/1‑139 (MQ=255)
                                                         tatGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTcccg                                                                           >  2:50570/1‑139 (MQ=255)
                                                          atGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCgg                                                                                                                             <  1:264135/88‑1 (MQ=255)
                                                          atGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCgg                                                                                                                             >  2:264135/1‑88 (MQ=255)
                                                          atGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTccc                                                                                         >  1:659977/1‑124 (MQ=255)
                                                          atGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTccc                                                                                         <  2:659977/124‑1 (MQ=255)
                                                          atGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTcccgc                                                                          >  1:253/1‑139 (MQ=255)
                                                                   tCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAAt                                                                 >  2:654594/1‑139 (MQ=255)
                                                                     aCGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCg                                                               >  2:848251/1‑139 (MQ=255)
                                                                        tAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAACACTTGTTGCACCCGGTCAGACAACCTCCCAGTTTTATTTCCCGCCCGCCAACTCGATa                                                            <  2:704119/139‑1 (MQ=255)
                                                                            aagaGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAAc                                                        >  2:760103/1‑139 (MQ=255)
                                                                                gCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGc                                                                                                                         >  2:443089/1‑70 (MQ=255)
                                                                                gCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGc                                                                                                                         <  1:443089/70‑1 (MQ=255)
                                                                                 cTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTcc                                                                                          <  1:51035/100‑1 (MQ=255)
                                                                                 cTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTcc                                                                                          >  2:51035/1‑100 (MQ=255)
                                                                                 cTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTccc                                                   >  1:609787/1‑139 (MQ=255)
                                                                                  tttAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCg                                                  <  1:50570/139‑1 (MQ=255)
                                                                                    tAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTg                                                >  1:882959/1‑139 (MQ=255)
                                                                                      aCTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGAc                                              >  1:319739/1‑139 (MQ=255)
                                                                                         ggTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTa                                           >  2:92386/1‑139 (MQ=255)
                                                                                          gTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTaa                                          >  1:252644/1‑139 (MQ=255)
                                                                                              aaaGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAgg                                      <  1:330168/139‑1 (MQ=255)
                                                                                              aaaGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAgg                                      <  2:225942/139‑1 (MQ=255)
                                                                                                 gagGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCtt                                   <  2:609787/139‑1 (MQ=255)
                                                                                                  agGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCttt                                  >  2:750613/1‑139 (MQ=255)
                                                                                                   ggTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTa                                 <  2:408125/139‑1 (MQ=255)
                                                                                                    gTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTAt                                <  2:252644/139‑1 (MQ=255)
                                                                                                    gTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTAt                                >  1:943192/1‑139 (MQ=255)
                                                                                                    gTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTAt                                >  2:540101/1‑139 (MQ=255)
                                                                                                     tGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTcc                                                                                          >  1:1038278/1‑80 (MQ=255)
                                                                                                     tGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTcc                                                                                          <  2:1038278/80‑1 (MQ=255)
                                                                                                     tGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCtt                                   <  1:690206/135‑1 (MQ=255)
                                                                                                     tGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATc                               >  1:878194/1‑139 (MQ=255)
                                                                                                     tGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCAGCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCtt                                   >  2:690206/1‑135 (MQ=255)
                                                                                                       aTTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCAc                             >  2:874782/1‑139 (MQ=255)
                                                                                                       aTTGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCAc                             >  2:724862/1‑139 (MQ=255)
                                                                                                        ttGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTAcc                                                                                                                               <  1:846037/40‑1 (MQ=255)
                                                                                                        ttGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTAcc                                                                                                                               >  2:846037/1‑40 (MQ=255)
                                                                                                        ttGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGAt                                                                                                                           >  2:684813/1‑44 (MQ=255)
                                                                                                        ttGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACt                            <  2:878194/139‑1 (MQ=255)
                                                                                                        ttGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAATACCGGAt                                                                                                                           <  1:684813/44‑1 (MQ=255)
                                                                                                         tGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTcc                                                    >  2:1049500/1‑114 (MQ=255)
                                                                                                         tGCCAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTcc                                                    <  1:1049500/114‑1 (MQ=255)
                                                                                                            cAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCa                                                                                                            >  1:341579/1‑55 (MQ=255)
                                                                                                            cAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCa                                                                                                            <  2:341579/55‑1 (MQ=255)
                                                                                                            cAGCAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACTtagt                        <  1:9007/139‑1 (MQ=255)
                                                                                                               cAACGGCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACTTAGTAGc                     <  2:1033401/139‑1 (MQ=255)
                                                                                                                   ggCGAGAAGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACTTAGTAGCCAGa                 >  1:331467/1‑139 (MQ=255)
                                                                                                                         aaGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACTTAGTAGCCAGACAATgg           <  2:108114/139‑1 (MQ=255)
                                                                                                                          aGCTTTAAGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACTTAGTAGCCAGACAATGGc          >  1:911595/1‑139 (MQ=255)
                                                                                                                                aaGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACTTAGTAGCCAGACAATGGCCTgcgc    <  1:802561/139‑1 (MQ=255)
                                                                                                                                 aGTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACTTAGTAGCCAGACAATGGCCTGcgcg   <  2:253/139‑1 (MQ=255)
                                                                                                                                  gTCGACGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACTTAGTAGCCAGACAATGGCCTGCGCGa  <  1:540101/139‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                     
GTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAATACTTGTTGCATCCGGTCAGACAACTTCCCTGTTTTATTTCCCGCCCGCCAAATCGATAAAACTTCCCGTGACGTAAGAGGCTTTATCACTTAGTAGCCAGACAATGGCCTGCGCGA  >  NC_000913/3044972‑3045240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A