Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F1 I2 R1	760	52.7	2744488	90.2%	2475528	105.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,086,296	T→C	V37A (GTA→GCA)	yqgC →	uncharacterized protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,086,296	0	T	C	100.0%	164.2 / NA	46	V37A (GTA→GCA)	yqgC	uncharacterized protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (23/23); total (23/23)

TTGAATCCTGAGAAGCGCCGAGATGGGTATAACATCGGCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGTATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAACGTCGTGTGCTTTTTATTTAAGCCGCGCGCC  >  NC_000913/3086165‑3086412

ttGAATCCTGAGAAGCGCCGAGATGGGTATAACATCGGCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCt                                                                                                               >  2:477706/1‑139 (MQ=255)

         gagaAGCGCCGAGATGGGTATAACATCGGCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGgccg                                                                                                      <  2:1035424/139‑1 (MQ=255)

                                   cGGCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCaa                                                                            >  2:629830/1‑139 (MQ=255)

                                   cGGCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCaa                                                                            >  1:282081/1‑139 (MQ=255)

                                    ggCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCaaa                                                                           >  1:894791/1‑139 (MQ=255)

                                     gCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCaaaa                                                                          >  2:927448/1‑139 (MQ=255)

                                     gCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCaa                                                                            <  1:176039/137‑1 (MQ=255)

                                     gCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCaa                                                                            >  2:176039/1‑137 (MQ=255)

                                         gTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAGCCCACAAGCCAAAActct                                                                      <  1:629830/139‑1 (MQ=255)

                                            tGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGAt                                                                   <  1:477706/139‑1 (MQ=255)

                                                   cAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAAcc                                                            <  2:894791/139‑1 (MQ=255)

                                                           cAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGa                                                    <  2:756713/139‑1 (MQ=255)

                                                                tGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCaaa                                                                           >  1:425203/1‑111 (MQ=255)

                                                                tGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCaaa                                                                           <  2:425203/111‑1 (MQ=255)

                                                                  cGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCa                                             >  2:158438/1‑139 (MQ=255)

                                                                      gAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAacac                                         <  1:158438/139‑1 (MQ=255)

                                                                            aTCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACgaaaga                                   >  2:933912/1‑139 (MQ=255)

                                                                             tCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACgaaagaa                                  <  2:282081/139‑1 (MQ=255)

                                                                                       aaCGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTACGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAACGTCGtgtg                        >  2:123336/1‑139 (MQ=255)

                                                                                        aCGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGc                                              >  1:1223926/1‑116 (MQ=255)

                                                                                        aCGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGc                                              <  2:1223926/116‑1 (MQ=255)

                                                                                            tGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTTGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTgg                                                     <  2:851688/105‑1 (MQ=255)

                                                                                            tGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTgg                                                     >  1:851688/1‑105 (MQ=255)

                                                                                            tGAGACACGTTAAGCAGCAGACAAGGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCTGGCTGGAAGTGGCAACACGAAAGAAACGTCGTGTGCtttt                   >  2:834022/1‑139 (MQ=255)

                                                                                                    gTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAac                                           <  2:235681/107‑1 (MQ=255)

                                                                                                    gTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAac                                           >  1:235681/1‑107 (MQ=255)

                                                                                                    gTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACgaaa                                     >  2:846195/1‑113 (MQ=255)

                                                                                                    gTTAAGCAGCAGACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACgaaa                                     <  1:846195/113‑1 (MQ=255)

                                                                                                          cagcagACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAAc                                                             >  1:61608/1‑83 (MQ=255)

                                                                                                          cagcagACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAAc                                                             <  2:61608/83‑1 (MQ=255)

                                                                                                           agcagACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCTGGCTGGAAGTGGCAACACGAAAGAAACGTCGTGTGCTTTTTATTTAAGCcgcgcg    <  1:834022/139‑1 (MQ=255)

                                                                                                             cagACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCaa                                                                            <  2:159225/65‑1 (MQ=255)

                                                                                                             cagACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCaa                                                                            >  1:159225/1‑65 (MQ=255)

                                                                                                             cagACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCt                                                       <  1:674363/86‑1 (MQ=255)

                                                                                                             cagACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCt                                                       >  2:674363/1‑86 (MQ=255)

                                                                                                             cagACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAACGTCGTGTGCTTTTTATTTAAGCCGCGcgcc  >  1:55781/1‑139 (MQ=255)

                                                                                                             cagACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAACGTCGTGTGCTTTTTATTTAAGCCGCGcgcc  <  2:1005763/139‑1 (MQ=255)

                                                                                                             cagACAACGGTTCATTATTACGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAACGTCGTGTGCTTTTTATTTAAGCCGCGcgcc  <  1:123336/139‑1 (MQ=255)

                                                                                                              agACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAACGTCgtgt                         <  2:523877/115‑1 (MQ=255)

                                                                                                              agACAACGGTTCATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAACGTCgtgt                         >  1:523877/1‑115 (MQ=255)

                                                                                                                         cATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACg                                                                                          >  1:478635/1‑39 (MQ=255)

                                                                                                                         cATTATTTCGCATCACCTCCACGGCCGCCTGTTAAGACg                                                                                          <  2:478635/39‑1 (MQ=255)

                                                                                                                          attattTCGCATCACCTCTACGGCCGCCTGTTAATACGAACCCACTAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGc                                              <  2:868882/82‑1 (MQ=255)

                                                                                                                          attattTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGc                                              >  1:868882/1‑82 (MQ=255)

                                                                                                                            tattTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAAcgtcgt                           >  2:88381/1‑99 (MQ=255)

                                                                                                                            tattTCGCATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAAcgtcgt                           <  1:88381/99‑1 (MQ=255)

TTGAATCCTGAGAAGCGCCGAGATGGGTATAACATCGGCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAATCTTCACCAGAACGGTGAGACAGGTTAAGCAGCAGACAACGGTTCATTATTTCGTATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGATTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAACGTCGTGTGCTTTTTATTTAAGCCGCGCGCC  >  NC_000913/3086165‑3086412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A