Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F1 I2 R1	760	52.7	2744488	90.2%	2475528	105.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,706,174	G→A	P511L (CCG→CTG)	dppA ←	dipeptide/heme ABC transporter periplasmic binding protein, dipeptide chemotaxis receptor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,706,174	0	G	A	100.0%	280.8 / NA	86	P511L (CCG→CTG)	dppA	dipeptide/heme ABC transporter periplasmic binding protein, dipeptide chemotaxis receptor
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (42/44); total (42/44)

TAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAAC  >  NC_000913/3706042‑3706308

tAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCaa                                                                                                                                  <  2:943337/139‑1 (MQ=255)

    cGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAacac                                                                                                                              >  2:1343335/1‑139 (MQ=255)

    cGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAacac                                                                                                                              <  2:510282/139‑1 (MQ=255)

      gAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACgg                                                                                                                            <  2:365485/139‑1 (MQ=255)

         cgcATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTgg                                                                                                                         >  1:777811/1‑139 (MQ=255)

          gcATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGa                                                                                                                        >  1:839154/1‑139 (MQ=255)

            aTCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGt                                                                                                                      <  2:425712/139‑1 (MQ=255)

                 gCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGt                                                                                                                                      <  2:724021/118‑1 (MQ=255)

                       ttgcctttgccATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCgatgatt                                                                                                           <  2:839154/139‑2 (MQ=255)

                       ttgcctttgccATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATc                                                                                                           <  2:777811/139‑1 (MQ=255)

                        tgcctttgccATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCa                                                                                                          <  1:736745/139‑1 (MQ=255)

                           ctttgccATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTg                                                                                                       >  1:1002559/1‑139 (MQ=255)

                            tttgccATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGc                                                                                                      <  1:232265/139‑1 (MQ=255)

                               gccATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGt                                                                                                                                      >  1:721066/1‑104 (MQ=255)

                               gccATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGt                                                                                                                                      <  2:721066/104‑1 (MQ=255)

                               gccATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCaaa                                                                                                                                 >  2:377963/1‑109 (MQ=255)

                               gccATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCaaa                                                                                                                                 <  1:377963/109‑1 (MQ=255)

                                 cATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAg                                                                                                 <  1:38871/139‑1 (MQ=255)

                                    cAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCt                                                                                              >  2:502132/1‑139 (MQ=255)

                                         ttGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAaca                                                                                                                               >  1:623845/1‑101 (MQ=255)

                                         ttGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAaca                                                                                                                               <  2:623845/101‑1 (MQ=255)

                                         ttGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACATCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCg                                                                                         <  1:504383/139‑1 (MQ=255)

                                          tGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGa                                                                                                                        >  1:1303703/1‑107 (MQ=255)

                                          tGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGa                                                                                                                        <  2:1303703/107‑1 (MQ=255)

                                          tGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGt                                                                                        <  2:40912/139‑1 (MQ=255)

                                               ggCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATc                                                                                   >  1:935529/1‑139 (MQ=255)

                                                 cTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATcac                                                                                 >  2:554546/1‑139 (MQ=255)

                                                   tttAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATcacca                                                                               >  2:168025/1‑139 (MQ=255)

                                                    ttAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATcaccac                                                                              <  1:578583/139‑1 (MQ=255)

                                                         tattCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTgcg                                                                         <  1:502132/139‑1 (MQ=255)

                                                         tattCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTgcg                                                                         <  2:339373/139‑1 (MQ=255)

                                                           ttCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATcaccac                                                                              >  1:1254536/1‑132 (MQ=255)

                                                           ttCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCt                                                                       >  2:53792/1‑139 (MQ=255)

                                                           ttCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCt                                                                       >  2:728710/1‑139 (MQ=255)

                                                           ttCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGCAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATcaccac                                                                              <  2:1254536/132‑1 (MQ=255)

                                                            tCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCtt                                                                      <  2:1002559/139‑1 (MQ=255)

                                                                tAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCttgttt                                                                  >  2:526208/1‑139 (MQ=255)

                                                                   agaCGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCCTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTa                                                               <  1:1141365/139‑1 (MQ=255)

                                                                          ttCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCa                                                        >  2:451734/1‑139 (MQ=255)

                                                                                   aTGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCg                                                                                                                 >  1:633171/1‑73 (MQ=255)

                                                                                   aTGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCg                                                                                                                 <  2:633171/73‑1 (MQ=255)

                                                                                   aTGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGc                                                                                                      <  2:403200/84‑1 (MQ=255)

                                                                                   aTGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGc                                                                                                      >  1:403200/1‑84 (MQ=255)

                                                                                   aTGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTa                                               >  1:562349/1‑139 (MQ=255)

                                                                                   aTGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTa                                               >  2:1305185/1‑139 (MQ=255)

                                                                                           cTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtc                                       <  1:168025/139‑1 (MQ=255)

                                                                                           cTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtc                                       <  1:1305185/139‑1 (MQ=255)

                                                                                             aaTGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtc                                       >  2:1039049/1‑137 (MQ=255)

                                                                                             aaTGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtc                                       <  1:1039049/137‑1 (MQ=255)

                                                                                              aTGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCa                                                        >  1:736797/1‑119 (MQ=255)

                                                                                              aTGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCa                                                        <  2:736797/119‑1 (MQ=255)

                                                                                              aTGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGgtcgtc                                    >  1:461128/1‑139 (MQ=255)

                                                                                               tGGATCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGtcgtcg                                   >  2:18749/1‑139 (MQ=255)

                                                                                                  aTCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGcc                                                                                               <  2:976653/76‑1 (MQ=255)

                                                                                                  aTCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGcc                                                                                               >  1:976653/1‑76 (MQ=255)

                                                                                                   tCAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAg                               >  1:1211521/1‑139 (MQ=255)

                                                                                                    cAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTgcg                                                                         <  2:65584/96‑1 (MQ=255)

                                                                                                    cAACCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTgcg                                                                         >  1:65584/1‑96 (MQ=255)

                                                                                                     aaCCACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCa                             >  2:1136107/1‑139 (MQ=255)

                                                                                                       ccACATAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCAcg                           <  2:562349/139‑1 (MQ=255)

                                                                                                         acaTAGCCTTTAACTTCTTTACGTACCAGTTCAAac                                                                                                                                >  2:407852/1‑36 (MQ=255)

                                                                                                         acaTAGCCTTTAACTTCTTTACGTACCAGTTCAAac                                                                                                                                <  1:407852/36‑1 (MQ=255)

                                                                                                           aTAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGcc                       >  1:662310/1‑139 (MQ=255)

                                                                                                            tAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTgcg                                                                         >  2:969838/1‑88 (MQ=255)

                                                                                                            tAGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTCAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTgcg                                                                         <  1:969838/88‑1 (MQ=255)

                                                                                                             aGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTgt                                                                                                      >  1:1018373/1‑57 (MQ=255)

                                                                                                             aGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTgt                                                                                                      <  2:1018373/58‑2 (MQ=255)

                                                                                                             aGCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCgg                     >  1:134250/1‑139 (MQ=255)

                                                                                                              gCCTTTAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGt                    <  1:526208/139‑1 (MQ=255)

                                                                                                                 tttAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGt                                                                                        <  2:1304942/68‑1 (MQ=255)

                                                                                                                 tttAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGt                                                                                        >  1:1304942/1‑68 (MQ=255)

                                                                                                                 tttAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCaa                                                       >  1:797107/1‑101 (MQ=255)

                                                                                                                 tttAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCaa                                                       <  2:797107/101‑1 (MQ=255)

                                                                                                                  ttAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGaa                >  1:1231632/1‑139 (MQ=255)

                                                                                                                   tAACTTCTTTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAAt               >  2:446928/1‑139 (MQ=255)

                                                                                                                       ttcttTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGa           <  1:446928/139‑1 (MQ=255)

                                                                                                                       ttcttTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGa           <  2:461128/139‑1 (MQ=255)

                                                                                                                       ttcttTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGa           <  1:379078/139‑1 (MQ=255)

                                                                                                                         cttTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGc                                                                                                <  2:594444/52‑1 (MQ=255)

                                                                                                                         cttTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGc                                                                                                >  1:594444/1‑52 (MQ=255)

                                                                                                                         cttTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTgcg                                                                         >  2:1137571/1‑75 (MQ=255)

                                                                                                                         cttTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTgcg                                                                         <  1:1137571/75‑1 (MQ=255)

                                                                                                                         cttTACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATc         >  1:321621/1‑139 (MQ=255)

                                                                                                                           ttACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTgcg                                                                         >  2:417035/1‑73 (MQ=255)

                                                                                                                           ttACGTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTgcg                                                                         <  1:417035/73‑1 (MQ=255)

                                                                                                                               gTACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCaaa   <  1:728710/139‑1 (MQ=255)

                                                                                                                                tACCAGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAAc  <  2:1211521/139‑1 (MQ=255)

TAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTTGTATGGCTTTTAATTATTCGATAGAGACGTTTTCGAAGTGATGTTTGCCTAATGGATCAACCACATAGCCTTTAACTTCTTTACGTACCGGTTCAAACACGGTGGAGTGAGCGATGATCAGTGCCGGAGCCTGATCGTGCATCACCACCTGCGCTTGTTTGTACAGTTCAACGCGTTTATTGTGGTCGTCGGTAGCACGCGCCGGTTGAATCAGATCTTCAAAC  >  NC_000913/3706042‑3706308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A