Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
524 |
31.4 |
1748232 |
97.8% |
1709770 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,918,220 |
T→A |
N16Y (AAC→TAC) |
atpG ← |
ATP synthase F1 complex subunit gamma |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,918,220 | 0 | T | A | 100.0%
| 147.0
/ NA
| 42 | N16Y (AAC→TAC) | atpG | ATP synthase F1 complex subunit gamma |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (23/19); total (23/19) |
TGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCC > NC_000913/3918142‑3918291
|
tGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACt > 2:705765/1‑81 (MQ=255)
tGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACt > 1:705755/1‑81 (MQ=255)
ggCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTg > 1:705766/1‑81 (MQ=255)
gccgccATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACt < 1:705697/79‑1 (MQ=255)
gccgccATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACt < 2:705698/79‑1 (MQ=255)
gccgccATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACt < 2:705696/79‑1 (MQ=255)
cgccATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGAc < 1:705699/81‑1 (MQ=255)
cgccATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGAc < 1:705700/81‑1 (MQ=255)
gccATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCTATCGCTTTAGTGATCTTTTGCGTGTACTGGACg > 1:705734/1‑81 (MQ=255)
gccATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACg > 2:705763/1‑81 (MQ=255)
gccATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACg > 1:705764/1‑81 (MQ=255)
aTGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCtt < 2:705701/81‑1 (MQ=255)
aTGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCtt > 2:705744/1‑81 (MQ=255)
ccTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCt > 1:705743/1‑81 (MQ=255)
cTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCtt < 2:705702/81‑1 (MQ=255)
tttACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACg > 1:705736/1‑81 (MQ=255)
tttACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACg > 2:705758/1‑81 (MQ=255)
tACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGt < 2:705703/80‑1 (MQ=255)
gCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTAtct < 1:705704/81‑1 (MQ=255)
ttGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCtttt > 1:705770/1‑81 (MQ=255)
ttGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCttt < 2:705705/80‑1 (MQ=255)
tGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCtttt < 1:705706/80‑1 (MQ=255)
ggAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTg < 2:705707/80‑1 (MQ=255)
aaGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTgcgc > 1:705773/1‑81 (MQ=255)
aaGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTgcgc > 2:705772/1‑81 (MQ=255)
aGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGcc < 2:705708/81‑1 (MQ=255)
ggcgACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGc > 1:705752/1‑81 (MQ=255)
gcgACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGcc < 1:705709/81‑1 (MQ=255)
gcgACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGc > 2:705746/1‑80 (MQ=255)
gACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCAt > 1:705725/1‑81 (MQ=255)
ccATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCAt > 2:705753/1‑79 (MQ=255)
ccATCTCCATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGa < 1:705710/81‑1 (MQ=255)
cATCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTtctc > 1:705757/1‑81 (MQ=255)
tCGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTctcct < 2:705711/81‑1 (MQ=255)
cGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTctcct > 2:705759/1‑80 (MQ=255)
cGCTTTAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTctcct > 2:705782/1‑80 (MQ=255)
tAGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAAt < 2:705712/79‑1 (MQ=255)
aGTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGcc > 2:705729/1‑81 (MQ=255)
gTGATCTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGcc < 2:705713/80‑1 (MQ=255)
cTTTTGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCgg > 2:705771/1‑81 (MQ=255)
tttGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGcc > 2:705738/1‑81 (MQ=255)
ttGCGTGTACTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGc < 1:705714/79‑1 (MQ=255)
|
TGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCC > NC_000913/3918142‑3918291
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
