Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
13 |
33.8 |
2116282 |
98.9% |
2093002 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,968,005 |
(A)7→6 |
coding (90/1104 nt) |
rfe → |
UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,967,999 | 0 | A | . | 100.0%
| 190.6
/ NA
| 40 | coding (84/1104 nt) | rfe | UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (26/14); total (26/14) |
ATTTACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGCAAAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATACCTCTCGTTGGGGGGATTT > NC_000913/3967920‑3968075
|
aTTTACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGCaa < 2:857414/81‑1 (MQ=255)
aTTTACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGCa > 1:857474/1‑80 (MQ=255)
tttACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGCaaa < 2:857415/81‑1 (MQ=255)
tACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGCaaaa > 1:857455/1‑80 (MQ=255)
aCTGACAGTGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGCaaaaa < 1:857416/80‑1 (MQ=255)
cTGACAGTGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGCaaaaaa < 2:857417/80‑1 (MQ=255)
aCAGTGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGCaaaaaagtcg > 1:857463/1‑77 (MQ=255)
aGTGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGt > 1:857470/1‑81 (MQ=255)
tGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGttt < 2:857418/81‑1 (MQ=255)
aGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTa < 2:857419/80‑1 (MQ=255)
aGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAg > 1:857473/1‑81 (MQ=255)
cTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTgg < 2:857420/80‑1 (MQ=255)
tGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGa > 1:857468/1‑80 (MQ=255)
aTCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATa < 2:857421/80‑1 (MQ=255)
catcaGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAAcc > 2:857481/1‑80 (MQ=255)
atcaGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAAc < 2:857422/78‑1 (MQ=255)
atcaGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCaa < 1:857423/81‑1 (MQ=255)
caGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAAc > 1:857472/1‑81 (MQ=255)
aGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACt > 1:857480/1‑81 (MQ=255)
aGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACt > 2:857424/1‑81 (MQ=255)
tATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTc < 1:857425/81‑1 (MQ=255)
aTTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTcc > 2:857471/1‑81 (MQ=255)
ttttATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCa > 2:857490/1‑80 (MQ=255)
tttATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCaaa > 1:857477/1‑81 (MQ=255)
tttATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCaa < 2:857426/80‑1 (MQ=255)
ttATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAAc > 2:857488/1‑81 (MQ=255)
tATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAAc < 2:857427/80‑1 (MQ=255)
ttCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGt > 2:857459/1‑80 (MQ=255)
cACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCa < 2:857428/80‑1 (MQ=255)
cACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCAc > 1:857482/1‑81 (MQ=255)
cACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCAc > 2:857485/1‑81 (MQ=255)
cACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCAc > 2:857479/1‑81 (MQ=255)
cACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCAc > 2:857465/1‑81 (MQ=255)
cACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCAc > 1:857475/1‑81 (MQ=255)
aCGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCAcc < 2:857429/81‑1 (MQ=255)
gACACTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAg > 1:857466/1‑81 (MQ=255)
acTGTTTCTGTTTTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGa > 1:857461/1‑81 (MQ=255)
ctgtttTTTGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATAc > 2:857486/1‑81 (MQ=255)
ttttttGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATAcc < 1:857430/79‑1 (MQ=255)
ttttttGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATACctc < 1:857432/81‑1 (MQ=255)
ttttttGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATACctc > 1:857503/1‑81 (MQ=255)
ttttttGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATACctc < 1:857431/81‑1 (MQ=255)
ttGCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATACCTCTCGt > 2:857478/1‑81 (MQ=255)
gCCCGTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATACCTCTCGTTg > 1:857476/1‑81 (MQ=255)
gTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATACCTCTCGTTggggg > 1:857493/1‑81 (MQ=255)
gTAAGGTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATACCTCTCGTTggggg > 2:857502/1‑81 (MQ=255)
gTGGC‑AAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATACCTCTCGTTGGGGGGAttt > 2:857500/1‑81 (MQ=255)
|
ATTTACTGACAGTGAGTACTGATCTCATCAGTATTTTTTTATTCACGACACTGTTTCTGTTTTTTGCCCGTAAGGTGGCAAAAAAAGTCGGTTTAGTGGATAAACCAAACTTCCGCAAACGTCACCAGGGATTGATACCTCTCGTTGGGGGGATTT > NC_000913/3967920‑3968075
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
