Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
315 |
33.5 |
1889570 |
98.7% |
1865005 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,991,035 |
C→T |
intergenic (‑269/‑118) |
hemC ← / → cyaA |
hydroxymethylbilane synthase/adenylate cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,991,035 | 0 | C | T | 100.0%
| 146.4
/ NA
| 40 | intergenic (‑269/‑118) | hemC/cyaA | hydroxymethylbilane synthase/adenylate cyclase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (24/16); total (24/16) |
TTTCTTTACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAACCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGTTGATGTTGGC > NC_000913/3990960‑3991111
|
tttctttACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGgc > 1:783954/1‑81 (MQ=255)
ctttACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGgcgc < 2:783908/80‑1 (MQ=255)
tttACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGcgcg > 1:783957/1‑80 (MQ=255)
tACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGaa > 2:783952/1‑80 (MQ=255)
tACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGaa < 2:783909/80‑1 (MQ=255)
aCGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGaa > 1:783961/1‑79 (MQ=255)
cAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTgg > 2:783948/1‑80 (MQ=255)
aaTCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTa < 1:783911/81‑1 (MQ=255)
aaTCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTa < 1:783910/81‑1 (MQ=255)
cAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACg > 1:783938/1‑81 (MQ=255)
cAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACg > 1:783975/1‑81 (MQ=255)
cAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGtt < 1:783912/81‑1 (MQ=255)
cAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGt > 1:783993/1‑80 (MQ=255)
aaGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTa > 2:783943/1‑81 (MQ=255)
ttAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCttt < 2:783913/80‑1 (MQ=255)
ttAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTg < 2:783914/81‑1 (MQ=255)
ttAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTg < 1:783915/81‑1 (MQ=255)
aaTTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGAc < 1:783916/80‑1 (MQ=255)
tGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATAc > 1:783972/1‑81 (MQ=255)
aTCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGa < 1:783917/81‑1 (MQ=255)
tCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGa > 1:783966/1‑80 (MQ=255)
cACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGaaa > 2:783971/1‑81 (MQ=255)
gTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAatat > 1:783958/1‑81 (MQ=255)
gTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAatat < 1:783918/81‑1 (MQ=255)
ttttAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATc > 2:783963/1‑81 (MQ=255)
tttAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATcc > 1:783941/1‑81 (MQ=255)
ttAGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATccc > 2:783955/1‑81 (MQ=255)
aGACCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCg > 2:783953/1‑80 (MQ=255)
aCCATTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAAt < 2:783919/81‑1 (MQ=255)
aTTTTTTCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGcc < 2:783920/81‑1 (MQ=255)
tttttCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCcgc > 1:783969/1‑81 (MQ=255)
tttCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCgt > 1:783959/1‑81 (MQ=255)
tttCGTCGTGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCgt > 1:783956/1‑81 (MQ=255)
gtGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCg > 1:783968/1‑81 (MQ=255)
tGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGt < 2:783921/81‑1 (MQ=255)
tGAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGt > 2:783977/1‑81 (MQ=255)
gAAACTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGtt > 1:783973/1‑81 (MQ=255)
aCTAAAAAAATCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGTTGAt < 1:783922/81‑1 (MQ=255)
aaaaaaaTCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGTTGATGtt > 1:783980/1‑81 (MQ=255)
aaaaTCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGTTGATGTTGGc < 1:783923/81‑1 (MQ=255)
|
TTTCTTTACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGACCATTTTTTCGTCGTGAAACTAAAAAAACCAGGCGCGAAAAGTGGTAACGGTTACCTTTGACATACGAAATATCCCGAATGCCGCGTGTTACCGTTGATGTTGGC > NC_000913/3990960‑3991111
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
