Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A18 F130 I1 R1
|
38 |
76.4 |
2725422 |
95.3% |
2597327 |
137.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
4,472,342 |
(A)8→9 |
coding (108/135 nt) |
pyrL ← |
pyrBI operon leader peptide |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 4,472,334 | 1 | . | A | 88.0%
| 241.8
/ 27.0
| 75 | coding (116/135 nt) | pyrL | pyrBI operon leader peptide |
| Reads supporting (aligned to +/- strand): ref base . (6/3); new base A (29/37); total (35/40) |
| Fisher's exact test for biased strand distribution p-value = 2.89e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
TGCTTCAACAGCTCTGGTTGCGGGTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑AAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCGGCAAATTGTCCGGCATTATAC > NC_000913_3_pae_tpiA/4472187‑4472481
|
tgCTTCAACAGCTCTGGTTGCGGGGTTGGTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑aa > 3:255423/1‑150 (MQ=255)
tCAACAGCTCTGGTTGCGGGTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑aaa‑a‑‑aa > 4:515210/1‑150 (MQ=255)
aaCAGCTCTGGTTGCGGGTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑aaa‑a‑‑aa‑aa > 4:464703/1‑150 (MQ=255)
aGCTCTGGTTGCGGGTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑aaa‑a‑‑aa‑aaagc > 1:776377/1‑147 (MQ=255)
gggTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAg > 2:770667/1‑150 (MQ=255)
gggTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAg > 2:732232/1‑150 (MQ=255)
gggTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAg > 4:142908/1‑150 (MQ=255)
gggTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑CCGATTGAg > 4:364244/1‑150 (MQ=255)
gTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAGGGACATCGCGACTAAGGTCGGTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑AAA‑AACAA‑AA‑GACCC‑TCGATTGAgg > 1:205910/1‑150 (MQ=255)
gTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAggg > 1:138174/1‑150 (MQ=255)
cTTTCATGTGCGCCGGTGAGGCCGGCACCAGATTAAGGTCATCGCGACTAAGATGGTTTATGGAAATGATATGTTTCTGATATAGAGGATTAGTCATCTTTTATCTCCTGACGCAAGGAAA‑AAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTgg < 4:336579/150‑1 (MQ=255)
tttCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCCTCGCGAATAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGAGTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTggg > 1:22319/1‑150 (MQ=255)
tttCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTggg > 3:341646/1‑150 (MQ=255)
tCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCAATCGAGGGGCtttttt < 1:111248/150‑6 (MQ=255)
aGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATg > 2:783159/1‑150 (MQ=255)
gTTTCGGCGCGGGCGCCAGCAACAGATGAAGGGCATGGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GAAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATgg < 2:535159/150‑1 (MQ=255)
gTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCATGG‑ACAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGTGCTGGGAATgg < 2:535117/150‑1 (MQ=255)
gTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGACTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATgg < 2:624904/150‑1 (MQ=255)
tttCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATggg > 2:231155/1‑150 (MQ=255)
tCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑AAA‑A‑‑AACAA‑GCCCC‑TCGATGGAGGGGCTCGGactccgtc > 1:627430/1‑143 (MQ=255)
gccgcTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCTTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGACTGAGGGGGTGGGATTGGTTGAt > 2:34177/1‑150 (MQ=255)
ccgcTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATc < 3:239692/150‑1 (MQ=255)
cTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GAAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAAc < 3:518699/150‑1 (MQ=255)
tGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAAca < 2:188902/150‑2 (MQ=255)
gTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACgg < 1:726433/150‑1 (MQ=255)
gCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGgaa < 1:246331/150‑1 (MQ=255)
ccAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGgaag < 3:42392/150‑1 (MQ=255)
cACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑t < 1:775887/110‑1 (MQ=255)
cACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑t > 2:775887/1‑110 (MQ=255)
cAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACg > 2:815685/1‑150 (MQ=255)
aTTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCa < 1:321168/150‑1 (MQ=255)
aTTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCa < 3:353620/150‑1 (MQ=255)
aTTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCa < 3:26122/150‑1 (MQ=255)
gTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑AAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGc > 1:106577/1‑150 (MQ=255)
tCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTc > 3:91864/1‑150 (MQ=255)
tCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑aaa‑a‑‑aa‑aaa < 3:86457/88‑2 (MQ=255)
tCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑aaa‑a‑‑aa‑aaa > 4:86457/1‑87 (MQ=255)
cgcgACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑aaa‑a‑‑aa‑aaa > 4:313026/1‑86 (MQ=255)
cgcgACTAAGGTCGTTTAGGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑aaa‑a‑‑aa‑aaa < 3:313026/87‑2 (MQ=255)
gcgACTAAGGGGGTTTATGGAAATGATATGTTACTGAGAAAACTGATTAGCCATCTTTTATCACCTGACGAATGA‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGtggt < 2:321469/150‑4 (MQ=255)
aCTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCttttt < 3:464703/150‑1 (MQ=255)
tAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGGCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTc < 1:465658/150‑1 (MQ=255)
tAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTc < 1:478125/150‑1 (MQ=255)
tAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTc > 3:74827/1‑150 (MQ=255)
tAAGGACGTTTATGGAAATTATATGTTTCTGATATAGCGGATTATCCATCTTTTATCTCCTAACAACTGG‑GAAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGTTCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTc < 4:15771/150‑1 (MQ=255)
ggTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑AAA‑A‑‑AA‑AACGCCAC‑TCGATAGACGAGCAACGCACGGCAAAACAACCGGAAGAAAAAAGGCAGGCAAGCGTCTTTTTTCAGa > 3:47508/1‑150 (MQ=255)
gTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGAc > 4:20660/1‑150 (MQ=255)
gTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCa > 2:341246/1‑131 (MQ=255)
gTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCa < 1:341246/131‑1 (MQ=255)
tttggggAAATGATATGTTTCTGGTATAGCGGATGAGCCATCTTGTATCGCCTGACGGCTGG‑GC‑AAAGA‑‑AA‑GA‑GCTCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCGGGCCAGTGGCTTTTTTCAGACGCgg > 4:445603/6‑150 (MQ=255)
aTGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTaa < 4:91864/150‑1 (MQ=255)
tGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAg > 2:295682/1‑150 (MQ=255)
tGGAAATGATATGGTTCTGATATAGCGGATTAACCATCTTTTAACTCCGGACGCCTTG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGAAAATGGGAGAACAACGCGTATAGATTCTTCAGGCCAGCGTGTTTTCTGAGACGGGGTAAg < 2:22319/150‑1 (MQ=255)
agtGATATGGGTCTGATAGAGCGGATTAGCCATGTTTGATTTCCGGACGAAAGA‑AAAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACaa < 2:694617/148‑1 (MQ=255)
tatGTTTGTGATATAGCGGATTAGCCATCTTTTATCGCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCA‑TCGATTGAGGGGCTGGGAATGGGTGAAAAAAAAAAAAAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGt < 2:673960/150‑1 (MQ=255)
tatGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGt < 3:20660/150‑1 (MQ=255)
atGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTc < 1:815685/150‑1 (MQ=255)
tGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCg < 1:770667/150‑1 (MQ=255)
tttCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑AAA‑A‑‑AA‑AA‑ACCCCGTTGATGGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGaa < 3:9272/150‑1 (MQ=255)
tttCTAATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GACAT‑TCTATTGAGGGGCTGGGAATGGGTGATTAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGaa < 3:9323/150‑1 (MQ=255)
tCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGAGCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTCAGATAAAATGTCGAaca > 1:37043/1‑150 (MQ=255)
tGATATAGCGGAGTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAacaca < 3:469353/150‑1 (MQ=255)
taGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACCAAATGTCGAACACACTGaa > 2:26915/1‑150 (MQ=255)
aGCGGATTAGACATCTTTTATCTACTGACGCCTGG‑GAAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAAc < 2:365153/150‑1 (MQ=255)
gCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑AAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCa > 1:731727/1‑150 (MQ=255)
gATTAGCCATCTTTTATTTTTTTTTGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTTAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATa > 4:328797/1‑150 (MQ=255)
gATTAGCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATa < 3:142908/150‑1 (MQ=255)
gCCATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGAATGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAACCCGGCAGGTCAGCGACTTTTTTCAGACGCGGTAAGACAAAAGGTGGAACACACTGAACCACACAgcc > 4:292445/1‑150 (MQ=255)
cATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAACAAGGCCGGCCAGCGTCTTTTTTCAGACGAGGTAAGAAAAACAGTCGACTAAACTGAACAATACAtcata > 1:376665/1‑147 (MQ=255)
cATCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACAtcctc > 2:727050/1‑150 (MQ=255)
tCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGt > 4:429610/1‑62 (MQ=255)
tCTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGt < 3:429610/62‑1 (MQ=255)
cTTTTATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCg < 1:732232/150‑1 (MQ=255)
ttttATCTCCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGTATGGGTGATCAGCGGGACGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCgg < 1:34177/150‑1 (MQ=255)
tcCTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCGGCAAATTg > 1:483077/1‑150 (MQ=255)
cTGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACGGAACCATACATCCTCCCGGCAAATTGTc > 3:465984/1‑150 (MQ=255)
tGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCGGCAAATTGTcc < 1:727050/150‑1 (MQ=255)
tGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCGGCAAATTGTcc > 1:326047/1‑150 (MQ=255)
tGACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCGGCAAATTGTcc > 1:296122/1‑150 (MQ=255)
gACGCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCGGCAAATTGTCCg < 3:256008/150‑1 (MQ=255)
gCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCGGCAAATTGTCCGGCa > 4:197337/1‑150 (MQ=255)
gCCTGG‑GCAAAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCGGCAAATTGTCCGGCa < 2:475580/150‑1 (MQ=255)
g‑gC‑AAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCGGCAAATTGTCCGGCATTATAc < 2:106577/150‑1 (MQ=255)
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TGCTTCAACAGCTCTGGTTGCGGGTTTGCTTTCAGTTTCGCCGCTGTCGCCAGCACCAGATTAAGGTCATCGCGACTAAGGTCGTTTATGGAAATGATATGTTTCTGATATAGCGGATTAGCCATCTTTTATCTCCTGACGCCTGG‑GC‑AAA‑A‑‑AA‑AA‑GCCCC‑TCGATTGAGGGGCTGGGAATGGGTGATCAACGGGAAGAAAAACGGCAGGCCAGCGTCTTTTTTCAGACGCGGTAAGACAAAATGTCGAACACACTGAACCATACATCCTCCCGGCAAATTGTCCGGCATTATAC > NC_000913_3_pae_tpiA/4472187‑4472481
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
