Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F19 I0 R1
|
32 |
84.8 |
2851444 |
95.0% |
2708871 |
147.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913_3_pae_tpiA |
4,296,296:1 |
+CG |
100% |
intergenic (+586/+56) |
gltP → / ← yjcO |
glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913_3_pae_tpiA | 4,296,296 | 1 | . | C | 93.7%
| 156.6
/ ‑1.4
| 60 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (0/2); major base C (32/20); minor base T (2/2); total (34/26) |
| Fisher's exact test for biased strand distribution p-value = 6.42e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| * | NC_000913_3_pae_tpiA | 4,296,296 | 2 | . | G | 95.0%
| 180.1
/ 1.6
| 60 | intergenic (+586/+56) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base . (0/3); new base G (34/23); total (34/26) |
| Fisher's exact test for biased strand distribution p-value = 7.60e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑A‑‑CCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCG > NC_000913_3_pae_tpiA/4296210‑4296431
||
gCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAc < 1:1099949/149‑1 (MQ=2)
ccGACGCTTAACGCGTCTTATCAGGCCTCCGCCAGCCAGCGCACTAGCCTGATTTAGCGTGATTTTGTGCATTGTATACCGCACGAGG‑‑G‑‑GCGCATC‑CGATATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAAc < 1:1038993/148‑1 (MQ=2)
cGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGtt < 2:499204/149‑1 (MQ=255)
ttAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCTTTGGt > 2:1102227/1‑149 (MQ=255)
ccgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTaa < 1:985287/148‑1 (MQ=255)
gcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtt > 2:1117244/1‑149 (MQ=255)
cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGGGTCTTATCAGGCATATCTTAACCGTTGGTTAAttt > 2:1353328/1‑149 (MQ=14)
gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ATGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTATCTTAGCCGTCGGATAAtttt > 2:558589/1‑149 (MQ=11)
gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ATGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTCACGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtttt > 2:558609/1‑149 (MQ=11)
gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAtttt > 2:1417205/1‑149 (MQ=255)
tCTTATCAGGCCTACGCCAGACAGCGCAATCGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCATCTTATCAGGCCTATCTTACCGTTTGGTTAAtttat > 1:234798/1‑147 (MQ=11)
tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTCTCTTAACCGTTGGTTACttttt > 2:343118/1‑149 (MQ=11)
ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTAGTTAATTTTTCa > 2:102507/1‑149 (MQ=255)
tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTcca > 2:260253/1‑147 (MQ=255)
tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa < 1:133881/149‑1 (MQ=255)
tATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaa > 2:217672/1‑149 (MQ=255)
aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGGAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCaaa < 1:382420/149‑1 (MQ=255)
tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc > 1:753253/1‑149 (MQ=255)
aGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ATGCCGCATC‑CGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActc < 1:558609/149‑1 (MQ=255)
aGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActc < 1:558589/149‑1 (MQ=255)
aGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGACCTATCTTAACCGTTGGTTAATTTTTCAAActc > 2:751120/1‑149 (MQ=255)
aGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTCGTAGGTCGGATAAGG‑‑CGGTC‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGCCGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActc > 2:898081/1‑149 (MQ=14)
aGGCCTACGCCAGACAGCGCAAGAGCCTTATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActc > 2:1076299/1‑149 (MQ=14)
gCCTACGCCAGACGCCGCAATAGCCCGACTTAGCGTGATTTAATAGCTTGGATAAGG‑‑CGTTT‑‑AG‑GCAGTTCATTACATCAATGAATACTGCTACTCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCtt < 1:700891/149‑1 (MQ=12)
cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTca > 2:582112/1‑149 (MQ=255)
tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGGCGCTTGCCGCGTCTTATCAGGCGTATCTTAACCGTTGGTTAATTTTTCAAACGCTTcac > 1:359013/1‑149 (MQ=17)
gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc > 2:1025397/1‑149 (MQ=255)
gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc > 2:1238780/1‑149 (MQ=255)
cAGTCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGCTCGGATAAGG‑‑CGTTT‑‑ATGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCg < 2:618152/149‑1 (MQ=18)
aCAGCGCAATGTCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGT‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTa < 2:195902/149‑1 (MQ=18)
catggcAATGGCCTGAGTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTAt < 2:203916/145‑1 (MQ=18)
cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaa > 1:211823/1‑149 (MQ=255)
gcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa < 1:245273/149‑1 (MQ=255)
gcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCaaa < 1:1305565/149‑1 (MQ=255)
aaTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAcc > 1:845053/1‑149 (MQ=255)
gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTc < 1:495953/149‑1 (MQ=255)
gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTc < 1:1003731/149‑1 (MQ=255)
ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTcc > 2:354632/1‑149 (MQ=255)
ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTcc > 2:109764/1‑149 (MQ=255)
ttGACTTACCGTGATTCTGTAGTTCCGATAAGG‑‑CGGTT‑‑AGGCCGAACC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCa < 2:379513/148‑1 (MQ=21)
cTGATTTGGCGTGATTTTGTAGGTCGGCTAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCa < 2:825493/149‑1 (MQ=21)
cTGAGTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCa < 1:1151167/149‑1 (MQ=255)
aTTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATAc > 2:806069/1‑149 (MQ=255)
tttAGTCTGATTTCGTTGGGCGGCTAGGG‑‑CGTTTCCG‑‑CCGCATC‑CGACACCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGTCCTATCTTATCCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACa < 2:180319/149‑1 (MQ=21)
ttAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGAGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAg > 2:79295/1‑149 (MQ=255)
aGCGTGATTTTGGAGGTCGGATAAGG‑‑CGTTG‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACCCCCGGTATCAAACCCTTCCATACAGCt < 2:736430/149‑1 (MQ=21)
gCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCAGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTc > 2:963170/1‑149 (MQ=255)
cGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCa > 2:117936/1‑149 (MQ=255)
gTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAg < 1:542908/149‑1 (MQ=255)
gTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAg < 1:1274826/149‑1 (MQ=255)
gTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAg < 1:1186710/149‑1 (MQ=255)
tGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAgg < 1:1224546/149‑1 (MQ=255)
ttttGTAGGTCGGATCCGA‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGATTGCCGCGTCTTAGCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTc > 2:532743/1‑149 (MQ=25)
tgTCTGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGCCATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTAAACCatg < 2:538679/148‑3 (MQ=25)
gTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATCCAGCTCAGGTTCAACCAGTg > 2:219123/1‑149 (MQ=255)
gTCGGATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGTTTCACCAAGTg > 1:64851/1‑149 (MQ=25)
ggATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAg > 1:802535/1‑149 (MQ=255)
ggATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAg > 1:1107501/1‑149 (MQ=255)
gATAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCCGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCaac > 1:661528/1‑147 (MQ=37)
aTAAGG‑‑CGTTT‑‑ACGCCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTGTCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAgcg > 1:812603/1‑149 (MQ=255)
||
GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGG‑‑CGTTT‑‑A‑‑CCGCATC‑CGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCG > NC_000913_3_pae_tpiA/4296210‑4296431
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
