Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,817,644 A→G V286A (GTA→GCA)  chbF ← monoacetylchitobiose‑6‑phosphate hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,817,6440AG100.0% 274.3 / NA 74V286A (GTA→GCA) chbFmonoacetylchitobiose‑6‑phosphate hydrolase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (36/38);  total (36/38)

TCGTTGTAGATAGCGTTGATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTACTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCT  >  NC_000913/1817509‑1817767
                                                                                                                                       |                                                                                                                           
tCGTTGTAGATAGCGTTGATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGtgctac                                                                                                                         >  2:581874/1‑140 (MQ=255)
tCGTTGTAGATAGCGTTGATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGtgctac                                                                                                                         <  1:1186702/140‑1 (MQ=255)
          tAGCGTTGATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGt                                                                                                               >  2:47627/1‑140 (MQ=255)
             cGTTGATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTgcg                                                                                                            >  1:740351/1‑140 (MQ=255)
             cGTTGATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTgcg                                                                                                            <  1:1050241/140‑1 (MQ=255)
             cGTTGATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTgcg                                                                                                            >  1:813749/1‑140 (MQ=255)
             cGTTGATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTgcg                                                                                                            >  2:1168855/1‑140 (MQ=255)
             cGTTGATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTgcg                                                                                                            >  2:561678/1‑140 (MQ=255)
                 gATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGcgccgc                                                                                                        <  1:471081/140‑1 (MQ=255)
                  aTCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGcgccg                                                                                                         >  1:276491/1‑138 (MQ=255)
                  aTCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGcgccg                                                                                                         <  2:276491/138‑1 (MQ=255)
                  aTCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCgccgcc                                                                                                       >  1:953737/1‑140 (MQ=255)
                   tCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCt                                                                                                      <  1:47627/140‑1 (MQ=255)
                       ttCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTgcgc                                                                                                           >  1:1207886/1‑131 (MQ=255)
                       ttCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTgcgc                                                                                                           <  2:1207886/131‑1 (MQ=255)
                       ttCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTgt                                                                                                  >  2:132296/1‑140 (MQ=255)
                              gctgcATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTc                                                                                           <  1:760450/140‑1 (MQ=255)
                                tgcATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGc                                                                                         <  2:477684/140‑1 (MQ=255)
                                   aTCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTg                                                                                                   >  2:1063147/1‑127 (MQ=255)
                                   aTCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTg                                                                                                   <  1:1063147/127‑1 (MQ=255)
                                   aTCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCa                                                                                      >  1:103497/1‑140 (MQ=255)
                                     cAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCAtt                                                                                    >  2:695388/1‑140 (MQ=255)
                                        agTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGcc                                                                                        >  2:1004446/1‑133 (MQ=255)
                                        agTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGcc                                                                                        <  1:1004446/133‑1 (MQ=255)
                                             taaGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGc                                                                            <  2:953737/140‑1 (MQ=255)
                                             taaGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGc                                                                            <  2:103497/140‑1 (MQ=255)
                                               aGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCa                                                                          <  2:802442/140‑1 (MQ=255)
                                               aGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCa                                                                          <  2:401518/140‑1 (MQ=255)
                                                  cccACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCa                                                                       <  1:280733/140‑1 (MQ=255)
                                                  cccACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCa                                                                       >  1:345622/1‑140 (MQ=255)
                                                  cccACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCa                                                                       >  1:381078/1‑140 (MQ=255)
                                                  cccACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCa                                                                       >  1:636680/1‑140 (MQ=255)
                                                   ccACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCAt                                                                      <  2:636680/140‑1 (MQ=255)
                                                    cACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCAtc                                                                     >  2:55696/1‑140 (MQ=255)
                                                    cACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCAtc                                                                     >  1:324148/1‑140 (MQ=255)
                                                      ccGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCAtctc                                                                   >  1:299300/1‑140 (MQ=255)
                                                       cgcgCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGc                                                                            <  1:271881/130‑1 (MQ=255)
                                                       cgcgCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGc                                                                            >  2:271881/1‑130 (MQ=255)
                                                         cgcTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCttt                                                                <  1:55696/140‑1 (MQ=255)
                                                         cgcTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCttt                                                                >  2:1297242/1‑140 (MQ=255)
                                                           cTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCt                                                              >  2:201883/1‑140 (MQ=255)
                                                              ttCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCt                                                           <  2:424391/140‑1 (MQ=255)
                                                              ttCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCt                                                           <  2:299300/140‑1 (MQ=255)
                                                              ttCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCt                                                           <  2:17228/140‑1 (MQ=255)
                                                              ttCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCt                                                           >  1:572500/1‑140 (MQ=255)
                                                              ttCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCt                                                           <  1:695388/140‑1 (MQ=255)
                                                                ccAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTg                                                         >  2:709511/1‑140 (MQ=255)
                                                                        ttCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATa                                                 >  2:78734/1‑140 (MQ=255)
                                                                        ttCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATa                                                 >  2:466919/1‑140 (MQ=255)
                                                                           ggCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATAcag                                              <  1:1168855/140‑1 (MQ=255)
                                                                           ggCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATAcag                                              <  2:381078/140‑1 (MQ=255)
                                                                                aaCTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGAt                                         >  2:183346/1‑140 (MQ=255)
                                                                                aaCTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGAt                                         <  2:321928/140‑1 (MQ=255)
                                                                                  cTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATaa                                       <  2:248752/140‑1 (MQ=255)
                                                                                     tCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGaa                                    >  1:1169455/1‑140 (MQ=255)
                                                                                       aGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACa                                  >  1:462263/1‑140 (MQ=255)
                                                                                            aGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGgca                             <  2:345622/140‑1 (MQ=255)
                                                                                              gATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGgcagc                           >  1:686565/1‑140 (MQ=255)
                                                                                               aTTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGgcagca                          <  2:671381/140‑1 (MQ=255)
                                                                                                      taCAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaa                   <  1:409463/140‑1 (MQ=255)
                                                                                                        cAGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacg                 >  2:351242/1‑140 (MQ=255)
                                                                                                         aGCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacga                <  1:374166/140‑1 (MQ=255)
                                                                                                          gCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacgaa               <  2:1169455/140‑1 (MQ=255)
                                                                                                          gCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacgaa               <  2:740351/140‑1 (MQ=255)
                                                                                                          gCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacgaa               <  1:1297242/140‑1 (MQ=255)
                                                                                                          gCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacgaa               <  1:201883/140‑1 (MQ=255)
                                                                                                          gCTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacgaa               >  2:132447/1‑140 (MQ=255)
                                                                                                           cTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacgaac              >  1:245163/1‑140 (MQ=255)
                                                                                                           cTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacgaac              >  2:412066/1‑140 (MQ=255)
                                                                                                           cTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacgaac              >  2:338288/1‑140 (MQ=255)
                                                                                                           cTCAAAAAGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCaacgaac              >  1:970888/1‑140 (MQ=255)
                                                                                                                aaaGTTGTTTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAAtt         <  1:561678/140‑1 (MQ=255)
                                                                                                                     tgttTCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGcc    <  1:1052619/140‑1 (MQ=255)
                                                                                                                       tttCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCt  <  1:581874/140‑1 (MQ=255)
                                                                                                                       tttCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCt  <  1:338288/140‑1 (MQ=255)
                                                                                                                       tttCTCGACTTTCTGTGCTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCt  <  2:813749/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                           
TCGTTGTAGATAGCGTTGATCACTTCGCATGCTGCATCAGAGTAATAAGCCCCACCGCGCTGTTCCAGTTCTTTCGGCTTAACTTTCAGCTCAGGATTTTTATACAGCTCAAAAAGTTGTTTCTCGACTTTCTGTACTACCTGCGCTCGTGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCT  >  NC_000913/1817509‑1817767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A