Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	169	80.7	2736954	99.0%	2709584	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,012,563	(G)_6→7	pseudogene (62/279 nt)	intG →	putative defective phage integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,012,557	1	.	G	94.1%	235.0 / 6.4	68	pseudogene (56/279 nt)	intG	putative defective phage integrase
Reads supporting (aligned to +/- strand): ref base . (2/2); new base G (29/35); total (31/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.89e-01

TCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAG  >  NC_000913/2012418‑2012689

tCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCa                                                                                                                                        <  2:433282/140‑1 (MQ=255)

tCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCa                                                                                                                                        >  2:38215/1‑140 (MQ=255)

  aaaaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gg                                                                                                                                    <  2:468706/140‑1 (MQ=255)

  aaaaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gg                                                                                                                                    >  2:259461/1‑140 (MQ=255)

  aaaaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gg                                                                                                                                    <  2:144805/140‑1 (MQ=255)

  aaaaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gg                                                                                                                                    <  2:1197279/140‑1 (MQ=255)

         gCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggtt                                                                                                                             <  1:965419/140‑4 (MQ=255)

         gCTCATATACATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggtt                                                                                                                             <  1:990632/140‑4 (MQ=255)

          cTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggtta                                                                                                                            >  1:1163354/1‑136 (MQ=255)

          cTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggtta                                                                                                                            >  2:1067039/1‑136 (MQ=255)

           tCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggttat                                                                                                                           <  2:941095/140‑6 (MQ=255)

           tCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggttat                                                                                                                           <  2:1163354/140‑6 (MQ=255)

           tCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggttat                                                                                                                           <  1:607420/140‑6 (MQ=255)

           tCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggttat                                                                                                                           <  1:519609/140‑6 (MQ=255)

            cATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGGCGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATc                                                                                                                           <  1:1107248/140‑1 (MQ=255)

             atatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATcg                                                                                                                          <  1:526766/140‑1 (MQ=255)

                tCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGt                                                                                                                       <  2:280581/140‑1 (MQ=255)

                 ccATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGta                                                                                                                      <  1:259461/140‑1 (MQ=255)

                  cATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGCTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGtat                                                                                                                     <  2:1195556/140‑1 (MQ=255)

                     cGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACg                                                                                                                  >  1:847827/1‑140 (MQ=255)

                       cccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGa                                                                                                                <  1:781861/140‑1 (MQ=255)

                       cccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGa                                                                                                                >  2:772798/1‑140 (MQ=255)

                       cccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggttat                                                                                                                           >  2:136606/1‑123 (MQ=255)

                       cccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggttat                                                                                                                           <  1:136606/128‑6 (MQ=255)

                       cccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggtta                                                                                                                            >  1:1271390/1‑123 (MQ=255)

                       cccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggtta                                                                                                                            <  2:1271390/127‑5 (MQ=255)

                       cccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggtt                                                                                                                             <  2:512408/126‑4 (MQ=255)

                       cccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑gggggggtt                                                                                                                             >  1:512408/1‑123 (MQ=255)

                         cGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATc                                                                                                              >  2:233018/1‑140 (MQ=255)

                           gAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGt                                                                                                            >  1:185959/1‑140 (MQ=255)

                             atatGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTgg                                                                                                          <  1:772798/140‑1 (MQ=255)

                              tatGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGa                                                                                                         <  2:290787/140‑1 (MQ=255)

                                      aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGa                                                                                                                <  1:1327747/125‑1 (MQ=255)

                                      aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGa                                                                                                                >  2:1327747/1‑125 (MQ=255)

                                      aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGaa                                                                                                 >  1:728310/1‑140 (MQ=255)

                                      aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGaa                                                                                                 >  2:370702/1‑140 (MQ=255)

                                      aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGaa                                                                                                 <  2:541643/140‑1 (MQ=255)

                                       aaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGaaa                                                                                                <  1:233018/140‑1 (MQ=255)

                                       aaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGaaa                                                                                                <  1:503035/140‑1 (MQ=255)

                                           aTCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGt                                                                                            <  1:370702/140‑1 (MQ=255)

                                            tCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGtt                                                                                           >  2:1202515/1‑140 (MQ=255)

                                                         aaTTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTAt                                                                              <  2:82761/140‑1 (MQ=255)

                                                          aTTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATc                                                                             >  1:836587/1‑140 (MQ=255)

                                                              tCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCAtt                                                                         >  1:862681/1‑140 (MQ=255)

                                                              tCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCAtt                                                                         >  2:368496/1‑140 (MQ=255)

                                                               ccAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCAttt                                                                        >  2:479300/1‑140 (MQ=255)

                                                                cAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCAtttt                                                                       <  2:184423/140‑1 (MQ=255)

                                                                  gagGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTaa                                                                     <  2:847827/140‑1 (MQ=255)

                                                                        aCTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAg                                                                >  1:1356395/1‑140 (MQ=255)

                                                                        aCTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGa                                                               >  1:626086/1‑140 (MQ=255)

                                                                        aCTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGa                                                               >  2:350311/1‑140 (MQ=255)

                                                                             tGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtg                                                          >  1:597998/1‑140 (MQ=255)

                                                                               cGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgag                                                        >  1:172256/1‑140 (MQ=255)

                                                                               cGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgag                                                        >  2:177534/1‑140 (MQ=255)

                                                                                gTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgagt                                                       >  1:470339/1‑140 (MQ=255)

                                                                                 tCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgagtga                                                     >  1:492045/1‑140 (MQ=255)

                                                                                   tgtgGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgagtgag                                                    >  1:352242/1‑140 (MQ=255)

                                                                                   tgcggTCGTAACAATATCCGACGTGGTGATCTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgagtgag                                                    <  2:836587/137‑1 (MQ=255)

                                                                                    gtgGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTgagtgagt                                                   <  1:38215/140‑1 (MQ=255)

                                                                                      ggTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACAAGAAATTGAGTGAGttt                                                 >  2:619542/1‑140 (MQ=255)

                                                                                          gTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGccc                                             <  1:166986/140‑1 (MQ=255)

                                                                                          gTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGccc                                             <  1:1202515/140‑1 (MQ=255)

                                                                                                 caTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCccatccat                                      >  1:1119941/1‑140 (MQ=255)

                                                                                                  aTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGccc                                             <  2:600897/132‑1 (MQ=255)

                                                                                                  aTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGccc                                             >  1:600897/1‑132 (MQ=255)

                                                                                                     cGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGccc                                  <  2:597998/140‑1 (MQ=255)

                                                                                                      gACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGcccc                                 >  1:383167/1‑140 (MQ=255)

                                                                                                      gACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCa                                >  1:1217989/1‑140 (MQ=255)

                                                                                                       aCGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCa                                <  2:191629/140‑1 (MQ=255)

                                                                                                        cGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCAc                               <  2:1119941/140‑1 (MQ=255)

                                                                                                           ggtgATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCAcgcg                            <  1:1067039/140‑1 (MQ=255)

                                                                                                           ggtgATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCAcgcg                            >  2:1301722/1‑140 (MQ=255)

                                                                                                             tgATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGt                          <  1:733294/140‑1 (MQ=255)

                                                                                                             tgATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGt                          <  2:1121614/140‑1 (MQ=255)

                                                                                                              gATGTGTCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTg                         <  2:447141/140‑1 (MQ=255)

                                                                                                                  tgtCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGAt                     <  2:172256/140‑1 (MQ=255)

                                                                                                                  tgtCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGAt                     >  1:1245633/1‑140 (MQ=255)

                                                                                                                  tgtCAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGAt                     >  2:1169409/1‑140 (MQ=255)

                                                                                                                     cAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCgg                  <  2:626086/140‑1 (MQ=255)

                                                                                                                     cAAATGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCgg                  <  2:728310/140‑1 (MQ=255)

                                                                                                                       aaTGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCgg                  >  1:1198243/1‑138 (MQ=255)

                                                                                                                       aaTGAGACGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCgg                  <  2:1198243/138‑1 (MQ=255)

                                                                                                                       aaTGAGACGCTCTGATGTTCA‑‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATg               <  2:492045/140‑1 (MQ=255)

                                                                                                                         tGAGACGCTCTGATGTTCAGGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATg               <  2:1356395/140‑1 (MQ=255)

                                                                                                                            gaCGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTaa            >  1:655632/1‑139 (MQ=255)

                                                                                                                            gaCGCTCTGATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTaa            <  2:655632/139‑1 (MQ=255)

                                                                                                                                    gATGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAacaaca   <  2:470339/140‑1 (MQ=255)

                                                                                                                                    gATGTTCA‑‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAg  <  1:753722/140‑1 (MQ=255)

                                                                                                                                     aTGTTCAG‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAg  >  2:731788/1‑140 (MQ=255)

TCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAG  >  NC_000913/2012418‑2012689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A