Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,521,497 G→A intergenic (+169/+96) lysV → / ← xapR tRNA‑Lys/DNA‑binding transcriptional activator XapR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,521,4970GA100.0% 212.2 / NA 65intergenic (+169/+96)lysV/xapRtRNA‑Lys/DNA‑binding transcriptional activator XapR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (28/37);  total (28/37)

CGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCGGGC  >  NC_000913/2521383‑2521632
                                                                                                                  |                                                                                                                                       
cGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCt                                                                                                                >  1:657972/1‑140 (MQ=14)
        cagcagGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTg                                                                                                        >  1:247071/1‑140 (MQ=38)
                ttgagttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                                                                <  2:121354/140‑1 (MQ=255)
                ttgagttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                                                                >  2:555964/1‑140 (MQ=255)
                ttgagttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                                                                >  2:569756/1‑140 (MQ=255)
                 tgagttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGc                                                                                               <  2:247071/140‑1 (MQ=255)
                  gagttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGcc                                                                                              <  1:231866/140‑1 (MQ=255)
                    gttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTg                                                                                            <  2:738929/140‑1 (MQ=255)
                     ttgagCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGa                                                                                           <  2:900543/140‑1 (MQ=255)
                        agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGaa                                                                                                    <  1:795517/128‑1 (MQ=255)
                        agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGaa                                                                                                    >  2:795517/1‑128 (MQ=255)
                        agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgc                                                                                        >  2:893214/1‑140 (MQ=255)
                        agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgc                                                                                        >  1:520709/1‑140 (MQ=255)
                        agCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgc                                                                                        >  1:587462/1‑140 (MQ=255)
                           gcAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCt                                                                                     <  2:592649/140‑1 (MQ=255)
                           gcAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCt                                                                                     <  1:644696/140‑1 (MQ=255)
                             aGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                                                                   <  2:574005/140‑1 (MQ=255)
                             aGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                                                                   >  2:653443/1‑140 (MQ=255)
                                   acaacGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAg                                                                             <  2:262187/140‑1 (MQ=255)
                                      acGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAg                                                                          <  2:520709/140‑1 (MQ=255)
                                      acGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAg                                                                          <  2:657972/140‑1 (MQ=255)
                                                tCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGAGCTTCACTTAGCAGACTACTAttt                                                                <  1:555964/140‑1 (MQ=255)
                                                    ggcgACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCgg                                                            <  2:500268/140‑1 (MQ=255)
                                                              cGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGC‑TTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc                                                 >  2:1164854/1‑140 (MQ=255)
                                                               gAAGGGCGAGCGAAGCGAGTCATTCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc                                                 <  1:943178/140‑1 (MQ=255)
                                                               gAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc                                                 <  2:587265/140‑1 (MQ=255)
                                                               gAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc                                                 <  2:843162/140‑1 (MQ=255)
                                                                aaGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtct                                                >  2:537754/1‑140 (MQ=255)
                                                                    gcgagcgaAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcctc                                            <  2:583133/140‑1 (MQ=255)
                                                                     cgagcgaAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc                                                 >  1:333663/1‑134 (MQ=255)
                                                                     cgagcgaAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc                                                 <  2:333663/134‑1 (MQ=255)
                                                                     cgagcgaAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCa                                           <  2:1160267/140‑1 (MQ=255)
                                                                      gagcgaAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCAc                                          <  2:799776/140‑1 (MQ=255)
                                                                      gagcgaAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCAc                                          <  2:241350/140‑1 (MQ=255)
                                                                      gagcgaAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCAc                                          <  1:893214/140‑1 (MQ=255)
                                                                       agcgaagcgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtctc                                               >  2:13997/1‑134 (MQ=255)
                                                                       agcgaagcgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtctc                                               <  1:13997/134‑1 (MQ=255)
                                                                       agcgaagcgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc                                                 <  2:716620/132‑1 (MQ=255)
                                                                       agcgaagcgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc                                                 >  1:716620/1‑132 (MQ=255)
                                                                          gaagcgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTAc                                      <  2:449218/140‑1 (MQ=255)
                                                                             gcgaGTCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACtgt                                   >  1:595348/1‑140 (MQ=255)
                                                                                  tCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTAc                                      <  2:4601/132‑1 (MQ=255)
                                                                                  tCATCCTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTAc                                      >  1:4601/1‑132 (MQ=255)
                                                                                      ccTGCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCa                          >  2:7300/1‑140 (MQ=255)
                                                                                         gCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCTGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGcc                       <  2:587462/140‑1 (MQ=255)
                                                                                         gCACGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGcc                       <  1:1222318/140‑1 (MQ=255)
                                                                                         gCACGACCCACCAATGTAAAAAAGCACCCTAAAGGC‑CCTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCa                      <  1:1164854/140‑1 (MQ=255)
                                                                                            cGACCCACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAAc                    <  1:210851/140‑1 (MQ=255)
                                                                                               cccACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGc                 >  1:394837/1‑140 (MQ=255)
                                                                                               cccACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGc                 >  1:338911/1‑140 (MQ=255)
                                                                                               cccACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGc                 >  1:349194/1‑140 (MQ=255)
                                                                                               cccACCAATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGc                 >  2:381815/1‑140 (MQ=255)
                                                                                                 caccaATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCtt               >  2:114416/1‑140 (MQ=255)
                                                                                                  accaATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCa                               >  2:776954/1‑123 (MQ=255)
                                                                                                  accaATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCa                               <  1:776954/123‑1 (MQ=255)
                                                                                                  accaATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGcc                       >  2:383891/1‑131 (MQ=255)
                                                                                                  accaATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGcc                       <  1:383891/131‑1 (MQ=255)
                                                                                                  accaATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTa              >  2:668215/1‑140 (MQ=255)
                                                                                                    caATGTAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAAc            <  1:569756/140‑1 (MQ=255)
                                                                                                         tAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATcg       <  1:668215/140‑1 (MQ=255)
                                                                                                         tAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATcg       >  1:668261/1‑140 (MQ=255)
                                                                                                         tAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATcg       >  2:405179/1‑140 (MQ=255)
                                                                                                         tAAAAAAGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATcg       >  2:1010551/1‑140 (MQ=255)
                                                                                                            aaaaGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCgg    <  2:338911/140‑1 (MQ=255)
                                                                                                              aaGCACCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCGGGc  <  2:668261/140‑1 (MQ=255)
                                                                                                                  |                                                                                                                                       
CGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCTACTGTGTCAATGCAGCCAACAGCTTAACCATCGCGGGC  >  NC_000913/2521383‑2521632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A