Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,567,131 T→C N326S (AAC→AGC)  eutH ← putative inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,567,1310TC100.0% 309.9 / NA 85N326S (AAC→AGC) eutHputative inner membrane protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (45/40);  total (45/40)

ATCATGGCGTTCATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGTTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACGCCCCTAACAGAACGCAGG  >  NC_000913/2566999‑2567266
                                                                                                                                    |                                                                                                                                       
aTCATGGCGTTCATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGc                                                                                                                                  >  1:386279/1‑140 (MQ=255)
   aTGGCGTTCATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAg                                                                                                                               >  2:775451/1‑140 (MQ=255)
    tGGCGTTCATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGc                                                                                                                              >  1:175087/1‑140 (MQ=255)
     ggCGTTCATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCg                                                                                                                             <  2:578111/140‑1 (MQ=255)
      gCGTTCATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGt                                                                                                                            >  1:59816/1‑140 (MQ=255)
       cGTTCATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGtt                                                                                                                           >  2:373101/1‑140 (MQ=255)
         ttCATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGc                                                                                                                         <  2:175322/140‑1 (MQ=255)
          tCATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGcc                                                                                                                        >  1:862908/1‑140 (MQ=255)
           cATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCa                                                                                                                                 >  2:83842/1‑130 (MQ=255)
           cATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCa                                                                                                                                 <  1:83842/130‑1 (MQ=255)
                tGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATg                                                                                                                  >  1:1293371/1‑140 (MQ=255)
                 ggCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGc                                                                                                                                  <  2:983713/123‑1 (MQ=255)
                 ggCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGc                                                                                                                                  >  1:983713/1‑123 (MQ=255)
                 ggCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGc                                                                                                                 >  2:796340/1‑140 (MQ=255)
                 ggCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGc                                                                                                                 >  2:835773/1‑140 (MQ=255)
                      cggcgAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCt                                                                                                            >  1:1026383/1‑140 (MQ=255)
                      cggcgAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCt                                                                                                            >  1:962138/1‑140 (MQ=255)
                       ggcgAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTg                                                                                                           >  1:1294643/1‑140 (MQ=255)
                       ggcgAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTg                                                                                                           >  2:1332180/1‑140 (MQ=255)
                        gcgAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGc                                                                                                          >  2:451954/1‑140 (MQ=255)
                         cgAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGTGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGcc                                                                                                         >  1:564450/1‑140 (MQ=255)
                          gAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCcg                                                                                                        <  2:1293371/140‑1 (MQ=255)
                            aGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCcgcg                                                                                                      <  2:386279/140‑1 (MQ=255)
                            aGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCcgcg                                                                                                      <  2:32398/140‑1 (MQ=255)
                              ccTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGAt                                                                                                    <  1:835773/140‑1 (MQ=255)
                              ccTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGAt                                                                                                    <  1:796340/140‑1 (MQ=255)
                                tAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGAtgt                                                                                                  <  1:373101/140‑1 (MQ=255)
                                   gTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGAtgttgt                                                                                               <  1:249327/140‑1 (MQ=255)
                                     ggTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTc                                                                                             <  1:1332180/140‑1 (MQ=255)
                                      gTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCa                                                                                            >  1:835883/1‑140 (MQ=255)
                                       tCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCat                                                                                           >  1:980291/1‑140 (MQ=255)
                                        cGCCCAGGGCTAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCata                                                                                          >  2:815354/1‑140 (MQ=255)
                                        cGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCata                                                                                          >  2:1130950/1‑140 (MQ=255)
                                        cGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCata                                                                                          <  1:731868/140‑1 (MQ=255)
                                        cGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCata                                                                                          <  2:835883/140‑1 (MQ=255)
                                          cccAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGTCACCATGCCGGCTGCCGCGATGTTGTTCATAtt                                                                                        <  1:28564/140‑1 (MQ=255)
                                            cAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTACCACCATGCCGGCTGCCGCGAtgt                                                                                                  >  1:488897/1‑128 (MQ=255)
                                            cAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTACCACCATGCCGGCTGCCGCGAtgt                                                                                                  <  2:488897/128‑1 (MQ=255)
                                             aGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAg                                                                                     <  2:962138/140‑1 (MQ=255)
                                                   aaaGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACttt                                                                               >  2:482654/1‑140 (MQ=255)
                                                         gcGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGAc                                                                         >  1:613138/1‑140 (MQ=255)
                                                          cGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTc                                                                                       >  2:901429/1‑125 (MQ=255)
                                                          cGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTc                                                                                       <  1:901429/125‑1 (MQ=255)
                                                           ggAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGc                                                                       >  1:320058/1‑140 (MQ=255)
                                                              aaCGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCtca                                                                    >  2:150592/1‑140 (MQ=255)
                                                                   cGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGc                                                               <  1:1107793/140‑1 (MQ=255)
                                                                    gAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGTCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCg                                                              <  2:175087/140‑1 (MQ=255)
                                                                     aaGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCgg                                                             <  1:625230/140‑1 (MQ=255)
                                                                       ggCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAATATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGtt                                                           >  1:559150/1‑140 (MQ=255)
                                                                            aGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCa                                                      <  1:1130950/140‑1 (MQ=255)
                                                                             gTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCaa                                                     <  2:613138/140‑1 (MQ=255)
                                                                              ttGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCaaa                                                    <  1:482654/140‑1 (MQ=255)
                                                                                        tGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTc                                          <  1:775451/140‑1 (MQ=255)
                                                                                        tGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTc                                          >  1:1097313/1‑140 (MQ=255)
                                                                                        tGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTc                                          >  1:542177/1‑140 (MQ=255)
                                                                                        tGCCGCGGGTATCCATCTGCTTCATCACGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTc                                          >  1:784057/1‑140 (MQ=255)
                                                                                           cgcgGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTcagc                                       >  2:1180211/1‑140 (MQ=255)
                                                                                               ggTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTcagcagca                                   >  2:851674/1‑140 (MQ=255)
                                                                                                gTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTcagcagcag                                  <  2:1294643/140‑1 (MQ=255)
                                                                                                gTATCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTcagcagcag                                  <  2:522485/140‑1 (MQ=255)
                                                                                                   tCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCAc                               <  2:1097313/140‑1 (MQ=255)
                                                                                                   tCCATCTGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCAc                               >  2:717184/1‑140 (MQ=255)
                                                                                                     cATCTGCTTCATCATGCCGAATATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCa                             <  2:559150/140‑1 (MQ=255)
                                                                                                         tGCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCgg                         >  1:1336909/1‑140 (MQ=255)
                                                                                                          gCTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGa                        >  2:282740/1‑140 (MQ=255)
                                                                                                           cTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTcagcagcag                                  >  2:427371/1‑129 (MQ=255)
                                                                                                           cTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTcagcagcag                                  <  1:427371/129‑1 (MQ=255)
                                                                                                           cTTCATCATGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGAt                       <  2:564450/140‑1 (MQ=255)
                                                                                                           cTTCATCACGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGAt                       <  2:784057/140‑1 (MQ=255)
                                                                                                             tcatcaTGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATAc                     <  1:467886/140‑1 (MQ=255)
                                                                                                             tcatcaTGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATAc                     <  1:97253/140‑1 (MQ=255)
                                                                                                              catcatGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACg                    >  1:868335/1‑140 (MQ=255)
                                                                                                              catcatGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACg                    >  2:123697/1‑140 (MQ=255)
                                                                                                               atcatGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGGGTCagcagcagc                                 >  1:956042/1‑126 (MQ=255)
                                                                                                               atcatGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCagcagcagc                                 <  2:956042/126‑1 (MQ=255)
                                                                                                                   tGCCGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGGGTCAGCAGCAGCACCATCGGATACGCCCCt               >  1:888321/1‑140 (MQ=255)
                                                                                                                     ccGAACATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACGCCCCTaa             <  2:1026383/140‑1 (MQ=255)
                                                                                                                         aCATCGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGGGTCAGCAGCAGCACCATCGGATACGCCCCTAACAGa         <  2:888321/140‑1 (MQ=255)
                                                                                                                             cGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACGCCCCTAACa           >  1:291694/1‑134 (MQ=255)
                                                                                                                             cGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACGCCCCTAACa           <  2:291694/134‑1 (MQ=255)
                                                                                                                             cGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACGCCCCTAACAGAACGc     >  1:595896/1‑140 (MQ=255)
                                                                                                                             cGGGATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACGCCCCTAACAGAACGc     >  2:1248094/1‑140 (MQ=255)
                                                                                                                              gggATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACGCCCCTAACAGAACGCa    <  1:1248094/140‑1 (MQ=255)
                                                                                                                              gggATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACGCCCCTAACAGAACGCa    <  1:150592/140‑1 (MQ=255)
                                                                                                                                gATGCTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACGCCCCTAACAGAACGCAgg  >  2:1366993/1‑140 (MQ=255)
                                                                                                                                    |                                                                                                                                       
ATCATGGCGTTCATGTTGGCAGCGGCGAAGCCTAAGTGGTCGCCCAGGGCGAAAGCAGCGGAAACGGCGAAGGCGCAGTTGATGACTTTGCCGCGGGTATCCATCTGCTTCATCATGCCGAACATCGGGATGTTGTTGGCAAGCGTTGCCACCATGCCGGCTGCCGCGATGTTGTTCATATTCAGTACTTTACCGACGCTCATCAGCGGTTTTTCAAACCAGCGAGTCAGCAGCAGCACCATCGGATACGCCCCTAACAGAACGCAGG  >  NC_000913/2566999‑2567266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A