Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,775,830 A→G intergenic (+14/‑89) ypjI → / → yfjX putative UPF0401 protein YpjI/CP4‑57 prophage; putative antirestriction protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,775,8300AG100.0% 306.3 / NA 83intergenic (+14/‑89)ypjI/yfjXputative UPF0401 protein YpjI/CP4‑57 prophage; putative antirestriction protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (41/42);  total (41/42)

GATAGTTCGTGATGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATC  >  NC_000913/2775694‑2775962
                                                                                                                                        |                                                                                                                                    
gATAGTTCGTGATGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCa                                                                                                                                   >  1:704329/1‑140 (MQ=255)
gATAGTTCGTGATGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCa                                                                                                                                   >  2:833211/1‑140 (MQ=255)
  tAGTTCGTGATGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGc                                                                                                                                 <  2:90237/140‑1 (MQ=255)
       cGTGATGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACAt                                                                                                                            >  1:570139/1‑140 (MQ=255)
       cGTGATGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACAt                                                                                                                            >  1:501611/1‑140 (MQ=255)
       cGTGATGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACAt                                                                                                                            >  2:84329/1‑140 (MQ=255)
        gTGATGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACAtt                                                                                                                           <  1:1328748/140‑1 (MQ=255)
            tGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTc                                                                                                                         >  1:1055619/1‑138 (MQ=255)
            tGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTc                                                                                                                         <  2:1055619/138‑1 (MQ=255)
             gCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCAcc                                                                                                                      >  1:1278420/1‑140 (MQ=255)
             gCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCAcc                                                                                                                      >  2:867984/1‑140 (MQ=255)
              ccGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCt                                                                                                                     >  2:173727/1‑140 (MQ=255)
               cGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCtt                                                                                                                    >  1:619028/1‑140 (MQ=255)
               cGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCtt                                                                                                                    >  1:75039/1‑140 (MQ=255)
                 aaGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCTGAATCATTTGCCAGCAACATTTCACCTTcc                                                                                                                  >  2:947609/1‑140 (MQ=255)
                 aaGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTcc                                                                                                                  >  1:1063314/1‑140 (MQ=255)
                 aaGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTcc                                                                                                                  >  1:407707/1‑140 (MQ=255)
                       ggATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcg                                                                                                            <  1:867984/140‑1 (MQ=255)
                        gATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcgc                                                                                                           <  2:570139/140‑1 (MQ=255)
                        gATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcgc                                                                                                           <  2:1170269/140‑1 (MQ=255)
                         aTGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcgcg                                                                                                          <  1:1276834/140‑1 (MQ=255)
                         aTGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcgcg                                                                                                          <  1:435407/140‑1 (MQ=255)
                         aTGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcgcg                                                                                                          <  1:763456/140‑1 (MQ=255)
                         aTGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcgcg                                                                                                          <  1:966919/140‑1 (MQ=255)
                         aTGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcgcg                                                                                                          <  2:1119088/140‑1 (MQ=255)
                         aTGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcgcg                                                                                                          <  2:1238749/140‑1 (MQ=255)
                          tGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACgcgc                                                                                                         <  2:407707/140‑1 (MQ=255)
                              tGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTtta                                                                                                     <  2:980865/140‑1 (MQ=255)
                               ggCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTttat                                                                                                    >  1:847670/1‑140 (MQ=255)
                                  gggCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATGCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTAc                                                                                                 >  2:1270119/1‑140 (MQ=255)
                                   ggCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGTCACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTttat                                                                                                    >  1:1039084/1‑136 (MQ=255)
                                   ggCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGTCACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTttat                                                                                                    <  2:1039084/136‑1 (MQ=255)
                                   ggCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcgcg                                                                                                          >  2:854757/1‑130 (MQ=255)
                                   ggCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAAcgcg                                                                                                          <  1:854757/130‑1 (MQ=255)
                                   ggCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTAcc                                                                                                >  1:165881/1‑140 (MQ=255)
                                       tGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCAt                                                                                            >  1:241066/1‑140 (MQ=255)
                                            cTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACgcc                                                                                       <  2:1126494/140‑1 (MQ=255)
                                              ttGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACgccag                                                                                     <  1:3697/140‑1 (MQ=255)
                                               tGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACgccagc                                                                                    >  2:360059/1‑140 (MQ=255)
                                                    cGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATcg                                                                               >  1:309401/1‑140 (MQ=255)
                                                        cGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATcgccgc                                                                           <  2:2812/140‑1 (MQ=255)
                                                          ccGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTg                                                                         <  2:847670/140‑1 (MQ=255)
                                                                     tttAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACGCCGAATCATTTGCCAGCAGCATTTCACATGCCCAAACGCGCTTTATTACCACAAACGCGAGCCATCGGCGCTGGCGTTTTTTAt                                                              <  2:1135870/140‑1 (MQ=255)
                                                                        aaCCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCa                                                           <  1:84329/140‑1 (MQ=255)
                                                                          ccGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACg                                                         <  2:704329/140‑1 (MQ=255)
                                                                          ccGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACg                                                         <  2:872703/140‑1 (MQ=255)
                                                                               atatCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCTGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGAc                                                    <  1:947609/140‑1 (MQ=255)
                                                                               atatCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGAc                                                    <  2:165881/140‑1 (MQ=255)
                                                                                       aGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCAt                                            >  1:254870/1‑140 (MQ=255)
                                                                                        ggTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATg                                           >  2:205355/1‑140 (MQ=255)
                                                                                          tCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGac                                         >  2:174613/1‑140 (MQ=255)
                                                                                          tCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGac                                         >  1:1111945/1‑140 (MQ=255)
                                                                                          tCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGac                                         <  1:833211/140‑1 (MQ=255)
                                                                                          tCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTATTTATTCACGGAGACATACCCATGac                                         >  2:1295941/1‑140 (MQ=255)
                                                                                            aGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGgaga                                                     >  2:393503/1‑126 (MQ=255)
                                                                                            aGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGgaga                                                     <  1:393503/126‑1 (MQ=255)
                                                                                            aGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaa                                       >  2:1322774/1‑140 (MQ=255)
                                                                                            aGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaa                                       >  1:709106/1‑140 (MQ=255)
                                                                                            aGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaa                                       >  1:424409/1‑140 (MQ=255)
                                                                                              gCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaaca                                     <  2:194864/140‑1 (MQ=255)
                                                                                              gCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaaca                                     <  2:254870/140‑1 (MQ=255)
                                                                                               cATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacac                                    <  2:619028/140‑1 (MQ=255)
                                                                                               cATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacac                                    <  1:174613/140‑1 (MQ=255)
                                                                                                  ccGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacacaga                                 <  1:205355/140‑1 (MQ=255)
                                                                                                  ccGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacacaga                                 <  2:1278420/140‑1 (MQ=255)
                                                                                                   cGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATa                                                 <  1:380099/123‑1 (MQ=255)
                                                                                                   cGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATa                                                 >  2:380099/1‑123 (MQ=255)
                                                                                                   cGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaaca                                     >  1:397190/1‑135 (MQ=255)
                                                                                                   cGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaaca                                     <  2:397190/135‑1 (MQ=255)
                                                                                                   cGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacacagac                                >  2:304789/1‑140 (MQ=255)
                                                                                                   cGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacacagac                                >  2:809776/1‑140 (MQ=255)
                                                                                                   cGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacacagac                                >  2:11189/1‑140 (MQ=255)
                                                                                                    gCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacacagaca                               <  1:173727/140‑1 (MQ=255)
                                                                                                    gCACCGACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacacagaca                               <  1:542843/140‑1 (MQ=255)
                                                                                                        cGACACCTTCCCCCGCTGACTCCGAATCATTTGACAGCAACCTTTCAACTTCCCAAACGCGCTTTCTTACATCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGt                           >  1:194864/1‑140 (MQ=37)
                                                                                                         gACACCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTa                          <  1:1270119/140‑1 (MQ=255)
                                                                                                          acacCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacac                                    >  2:57600/1‑129 (MQ=255)
                                                                                                          acacCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacac                                    <  1:57600/129‑1 (MQ=255)
                                                                                                          acacCTTCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTAc                         <  2:709106/140‑1 (MQ=255)
                                                                                                                tCCCCCGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTTACGGAGACATACCCATGACAACACAGACACAGTACGACCTc                   >  2:280820/1‑140 (MQ=255)
                                                                                                                   cccGCTGACTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTa                <  2:309401/140‑1 (MQ=255)
                                                                                                                          aCTCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTa         >  1:391009/1‑140 (MQ=255)
                                                                                                                            tCCGAATCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAAc       >  1:114942/1‑140 (MQ=255)
                                                                                                                                 aTCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATc  <  1:360059/140‑1 (MQ=255)
                                                                                                                                 aTCATTTGCCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATc  <  2:241066/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                    
GATAGTTCGTGATGCCGAAGGTCGGATGGTTGGCGGGCATGGAACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATC  >  NC_000913/2775694‑2775962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A