Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,831,394 A→G L299P (CTG→CCG)  norR ← DNA‑binding transcriptional dual regulator NorR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,831,3940AG100.0% 232.6 / NA 64L299P (CTG→CCG) norRDNA‑binding transcriptional dual regulator NorR
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (32/32);  total (32/32)

AAATCGGCGCGGAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCAGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCGAACAACTCACT  >  NC_000913/2831259‑2831530
                                                                                                                                       |                                                                                                                                        
aaaTCGGCGCGGAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCtt                                                                                                                                      >  2:1150741/1‑140 (MQ=255)
    cGGCGCGGAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGcc                                                                                                                                  >  1:108464/1‑140 (MQ=255)
      gcgcGGAATCGCCCTGCCTGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTg                                                                                                                                >  2:1322334/1‑140 (MQ=255)
        gcgGAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACCCCCTCAGCGGCTTGGCCTGCa                                                                                                                              <  1:1301094/140‑1 (MQ=255)
        gcgGAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCa                                                                                                                              <  1:296674/140‑1 (MQ=255)
            aaTCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTg                                                                                                                                     >  1:438305/1‑129 (MQ=255)
            aaTCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTg                                                                                                                                     <  2:438305/129‑1 (MQ=255)
                    tGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACa                                                                                                                  >  2:409034/1‑140 (MQ=255)
                    tGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACa                                                                                                                  <  2:580467/140‑1 (MQ=255)
                     gCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACaa                                                                                                                 <  1:1072899/140‑1 (MQ=255)
                      ccAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAAc                                                                                                                >  1:1028055/1‑140 (MQ=255)
                      ccAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAAc                                                                                                                >  1:37263/1‑140 (MQ=255)
                      ccAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTG‑AATGCCAACGACAACt                                                                                                               >  1:900594/1‑140 (MQ=255)
                              tctTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGAt                                                                                                        <  1:362713/140‑1 (MQ=255)
                              tctTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGAt                                                                                                        <  1:1322334/140‑1 (MQ=255)
                              tctTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGAt                                                                                                        <  1:649008/140‑1 (MQ=255)
                               ctTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGAt                                                                                                        >  1:424353/1‑139 (MQ=255)
                               ctTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGAt                                                                                                        <  2:424353/139‑1 (MQ=255)
                                ttCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGAtct                                                                                                      >  2:1307775/1‑140 (MQ=255)
                                                   gTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGcc                                                                                   <  2:1028055/140‑1 (MQ=255)
                                                   gTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGcc                                                                                   >  1:328983/1‑140 (MQ=255)
                                                       ccgccAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTa                                                                               <  2:447982/140‑1 (MQ=255)
                                                         gccAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTa                                                                               >  1:883220/1‑138 (MQ=255)
                                                         gccAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTa                                                                               <  2:883220/138‑1 (MQ=255)
                                                         gccAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATc                                                                             <  1:1344055/140‑1 (MQ=255)
                                                          ccAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATcc                                                                            >  1:1208178/1‑140 (MQ=255)
                                                           cAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCg                                                                           <  1:592491/140‑1 (MQ=255)
                                                            aGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGc                                                                          >  1:963501/1‑140 (MQ=255)
                                                             gcccgcgCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGcc                                                                         <  2:959711/137‑1 (MQ=255)
                                                                          gACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTcc                                                            <  2:398698/140‑1 (MQ=255)
                                                                             ccGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGc                                                         >  2:660524/1‑140 (MQ=255)
                                                                               gCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACCCCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTg                                                       <  1:624503/140‑1 (MQ=255)
                                                                               gCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTg                                                       <  2:1117010/140‑1 (MQ=255)
                                                                                 aaaCAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCg                                                     >  2:204562/1‑140 (MQ=255)
                                                                                    caacGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGAtt                                                  <  1:660524/140‑1 (MQ=255)
                                                                                           cATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATa                                           >  1:5240/1‑140 (MQ=255)
                                                                                           cATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATa                                           >  2:1073739/1‑140 (MQ=255)
                                                                                                    cgcgCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTa                                  >  2:115274/1‑140 (MQ=255)
                                                                                                    cgcgCTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTa                                  <  1:204562/140‑1 (MQ=255)
                                                                                                      cgcTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTaaa                                <  2:963501/140‑1 (MQ=255)
                                                                                                        cTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACg                              <  2:108464/140‑1 (MQ=255)
                                                                                                        cTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACg                              <  2:933113/140‑1 (MQ=255)
                                                                                                        cTGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACg                              >  2:291207/1‑140 (MQ=255)
                                                                                                         tGAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGc                             >  1:1368259/1‑140 (MQ=255)
                                                                                                          gAATATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCt                            <  2:1165235/140‑1 (MQ=255)
                                                                                                           aaTATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACg                              <  2:195500/137‑1 (MQ=255)
                                                                                                           aaTATCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACg                              >  1:195500/1‑137 (MQ=255)
                                                                                                            atatCGCCATACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTcc                          <  1:806728/140‑1 (MQ=255)
                                                                                                                     tACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACg                              <  1:916694/127‑1 (MQ=255)
                                                                                                                     tACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACg                              >  2:916694/1‑127 (MQ=255)
                                                                                                                     tACTGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATg                 >  2:188246/1‑140 (MQ=255)
                                                                                                                        tGCAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGccc              <  1:115274/140‑1 (MQ=255)
                                                                                                                          cAACACCCTCAGCGGCTTGGTCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTca                     <  1:754403/131‑1 (MQ=255)
                                                                                                                          cAACACCCTCAGCGGCTTGGTCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTca                     >  2:754403/1‑131 (MQ=255)
                                                                                                                          cAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACg                              <  1:1072091/122‑1 (MQ=255)
                                                                                                                          cAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACg                              >  2:1072091/1‑122 (MQ=255)
                                                                                                                          cAACACCCTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCGa            >  1:121496/1‑140 (MQ=255)
                                                                                                                             cacCCTCAGCGGCTTGGCCTGCAATGCCAACGATAACTCGCCGATCTCATCCAGAATCAGCGTGGCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCGaaca         <  2:1087116/140‑1 (MQ=255)
                                                                                                                               cccTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCg             <  2:479019/134‑1 (MQ=255)
                                                                                                                               cccTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCg             >  1:479019/1‑134 (MQ=255)
                                                                                                                               cccTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCGaacaac       >  1:1112255/1‑140 (MQ=255)
                                                                                                                               cccTCAGCGGCTTGGCCTG‑AATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCGAACAACt      <  2:900594/140‑1 (MQ=255)
                                                                                                                                ccTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCGAACAACt      >  1:435936/1‑140 (MQ=255)
                                                                                                                                ccTCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCGAACAACt      >  1:509690/1‑140 (MQ=255)
                                                                                                                                  tCAGCGGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCGAACAACTCa    >  1:679795/1‑140 (MQ=255)
                                                                                                                                    agcggcTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCGAACAACTCACt  <  1:291207/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
AAATCGGCGCGGAATCGCCCTGCCAGCACCTCTTCGCGTAAATCGCGGTTAGTCGCCGCCAGCACGCGCACATCGACCCGCAAACAACGGTCATCGCCAACGCGCTGAATATCGCCATACTGCAACACCCTCAGCAGCTTGGCCTGCAATGCCAACGACAACTCGCCGATCTCATCCAGAAACAGCGTGCCGTTATCCGCCATTTCAAACTTCCCGCTGCGATTACTGATAGCGCCAGTAAACGCTCCTTTCACATGCCCGAACAACTCACT  >  NC_000913/2831259‑2831530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A