Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	169	80.7	2736954	99.0%	2709584	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,917,664	A→G	S870G (AGC→GGC)	barA →	sensory histidine kinase BarA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,917,664	0	A	G	100.0%	250.8 / NA	69	S870G (AGC→GGC)	barA	sensory histidine kinase BarA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (27/42); total (27/42)

TTTAGCGCGCGATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATAGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACGAGATGGATAATGTCGCGCGCGAAGCCAGCA  >  NC_000913/2917528‑2917799

tttAGCGCGCGATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCg                                                                                                                                      <  2:402154/140‑1 (MQ=255)

 ttAGCGCGCGATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCgg                                                                                                                                     <  2:250896/140‑1 (MQ=255)

     cgcgcgATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGtgtg                                                                                                                                 >  1:648738/1‑140 (MQ=255)

      gcgcgATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGc                                                                                                                                <  1:1144190/140‑1 (MQ=255)

      gcgcgATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGc                                                                                                                                <  1:854858/140‑1 (MQ=255)

      gcgcgATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGc                                                                                                                                >  2:854858/1‑140 (MQ=255)

       cgcgATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTTATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGcc                                                                                                                               >  1:89177/1‑140 (MQ=255)

        gcgATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCa                                                                                                                              <  1:966183/140‑1 (MQ=255)

        gcgATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCa                                                                                                                              <  1:470199/140‑1 (MQ=255)

         cgATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCAc                                                                                                                             >  1:762158/1‑140 (MQ=255)

           atatGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGt                                                                                                                           <  2:1203622/140‑1 (MQ=255)

            tatGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTa                                                                                                                          <  1:354741/140‑1 (MQ=255)

                    aaaTGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCCCGTATGAAGAAt                                                                                                                  >  1:1134451/1‑140 (MQ=255)

                    aaaTGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAAt                                                                                                                  >  2:945774/1‑140 (MQ=255)

                     aaTGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAAtc                                                                                                                 <  2:762158/140‑1 (MQ=255)

                      aTGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGc                                                                                                                                <  2:101794/124‑1 (MQ=255)

                      aTGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGc                                                                                                                                >  1:101794/1‑124 (MQ=255)

                        gTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATctct                                                                                                              >  2:138897/1‑140 (MQ=255)

                             tCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCaa                                                                                                         <  2:387473/140‑1 (MQ=255)

                                 tttCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGa                                                                                                     >  2:355073/1‑140 (MQ=255)

                                 tttCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGa                                                                                                     <  2:208602/140‑1 (MQ=255)

                                 tttCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGa                                                                                                     >  1:208602/1‑140 (MQ=255)

                                 tttCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATT‑ATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGAt                                                                                                    >  2:382580/1‑140 (MQ=255)

                                  ttCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGAt                                                                                                    <  2:160140/140‑1 (MQ=255)

                                  ttCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGAt                                                                                                    <  2:523038/140‑1 (MQ=255)

                                  ttCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGAt                                                                                                    <  2:338571/140‑1 (MQ=255)

                                  ttCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGAt                                                                                                    <  2:1062106/140‑1 (MQ=255)

                                   tCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATc                                                                                                   <  2:317289/140‑1 (MQ=255)

                                       gcctgAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGaac                                                                                               >  1:727454/1‑140 (MQ=255)

                                       gcctgAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGaac                                                                                               <  1:1282566/140‑1 (MQ=255)

                                       gcctgAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGACTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGaac                                                                                               <  2:949436/140‑1 (MQ=255)

                                          tgAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGaacaac                                                                                            <  1:355073/140‑1 (MQ=255)

                                           gAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAacaaca                                                                                           >  2:757546/1‑140 (MQ=255)

                                           gAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAacaaca                                                                                           >  1:662218/1‑140 (MQ=255)

                                            aaGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAg                                                                                          <  1:647598/140‑1 (MQ=255)

                                            aaGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAg                                                                                          <  1:1318134/140‑1 (MQ=255)

                                             aGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGc                                                                                         >  2:576607/1‑140 (MQ=255)

                                                  gCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGt                                                                                    >  2:1199097/1‑140 (MQ=255)

                                                    aacaaAGTTGAGGAACAGCTGGTTGGAGAACACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAg                                                                                  <  2:835048/140‑1 (MQ=255)

                                                    aacaaAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCGCGTATGAAGAATCTGTGCCAGCTGATCGAGCAGCAGCTACGTAg                                                                                  <  2:1134451/140‑1 (MQ=255)

                                                    aacaaAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAg                                                                                  <  2:648738/140‑1 (MQ=255)

                                                    aacaaAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAg                                                                                  <  2:899875/140‑1 (MQ=255)

                                                                   cAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAaagaaga                                                                   <  1:488685/140‑1 (MQ=255)

                                                                   cAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAaagaaga                                                                   <  2:727454/140‑1 (MQ=255)

                                                                     gcttgTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAaagaagaag                                                                 >  2:392109/5‑140 (MQ=255)

                                                                     gCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAaagaagaag                                                                 >  2:858016/1‑140 (MQ=255)

                                                                                  aaCCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGa                                                    <  1:1199097/140‑1 (MQ=255)

                                                                                  aaCCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAACACAATTTGGAACCggc                                                    <  2:1087083/140‑2 (MQ=255)

                                                                                   aCCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAg                                                   <  1:945774/140‑1 (MQ=255)

                                                                                       ggAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAgctgc                                               <  1:858016/140‑1 (MQ=255)

                                                                                          aGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTgg                                            <  2:598575/140‑1 (MQ=255)

                                                                                           ggCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGa                                           <  2:1253391/140‑1 (MQ=255)

                                                                                            gCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGaa                                          <  2:662218/140‑1 (MQ=255)

                                                                                               tGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTg                                       >  1:908671/1‑140 (MQ=255)

                                                                                                   tgatttgattCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTgg                                   <  1:392109/140‑1 (MQ=255)

                                                                                                      tttgattCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACg                                >  2:847024/1‑140 (MQ=255)

                                                                                                       ttgattCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACga                               >  2:1214537/1‑140 (MQ=255)

                                                                                                        tgattCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGTCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACgag                              <  1:348741/140‑1 (MQ=255)

                                                                                                        tgattCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACgag                              <  2:411991/140‑1 (MQ=255)

                                                                                                        tgattCATAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACgag                              <  1:347005/140‑1 (MQ=255)

                                                                                                               tAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACGAGATGGATa                       >  1:1342131/1‑140 (MQ=255)

                                                                                                               tAAACTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACGAGATGGATa                       >  1:435376/1‑140 (MQ=255)

                                                                                                                  aCTGCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACGAGATGGATAATg                    <  2:882572/140‑1 (MQ=255)

                                                                                                                     gCATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACGAGATGGATAATGTcg                 >  1:340991/1‑140 (MQ=255)

                                                                                                                      cATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACgaga                             <  2:1268548/127‑1 (MQ=255)

                                                                                                                      cATGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACgaga                             >  1:1268548/1‑127 (MQ=255)

                                                                                                                        tGGCAGTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACGAGATGGATAATGTcgcgc              >  2:497056/1‑140 (MQ=255)

                                                                                                                             gTTGCGGCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACGAGATGGATAATGTCGCGCGCGaa         <  1:382580/140‑1 (MQ=255)

                                                                                                                                   gCTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACGAGATGGATAATGTCGCGCGCGGAggccgc   >  2:774718/1‑135 (MQ=255)

                                                                                                                                    cTATGGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACGAGATGGATAATGTCGCGCGCGAAGCCAGCa  <  1:138897/140‑1 (MQ=255)

TTTAGCGCGCGATATGCTGCAAATGTTACTCGATTTCCTGCCTGAAGTTCGCAACAAAGTTGAGGAACAGCTGGTTGGAGAAAACCCGGAAGGCCTGGTTGATTTGATTCATAAACTGCATGGCAGTTGCGGCTATAGCGGTGTGCCACGTATGAAGAATCTCTGCCAACTGATCGAACAACAGCTACGTAGCGGTACTAAAGAAGAAGATTTGGAACCGGAGCTGCTGGAACTGTTGGACGAGATGGATAATGTCGCGCGCGAAGCCAGCA  >  NC_000913/2917528‑2917799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A