Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F28 I1 R1	169	80.7	2736954	99.0%	2709584	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,961,100	A→G	R443R (CGT→CGC)	recC ←	exodeoxyribonuclease V subunit RecC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,961,100	0	A	G	100.0%	283.9 / NA	77	R443R (CGT→CGC)	recC	exodeoxyribonuclease V subunit RecC
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (32/45); total (32/45)

CCTTCTTCGGTGATGTCAAACCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCACGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAGTGTCGGGTCTTC  >  NC_000913/2960963‑2961234

ccTTCTTCGGTGATGTCAAACCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCcgcgcgcg                                                                                                                                      >  2:1137084/1‑140 (MQ=255)

 cttcttCGGTGATGTCAAACCGCGCCGCCAGCACCAGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCgcga                                                                                                                                     <  2:928656/140‑1 (MQ=255)

  ttcttcGGTGATGTCAAACCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCgcgac                                                                                                                                    >  2:1334157/1‑140 (MQ=255)

         gTGATGTCAAACCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGa                                                                                                                             >  2:668149/1‑140 (MQ=255)

          tGATGTCAAACCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGaa                                                                                                                            <  1:1022724/140‑1 (MQ=255)

           gATGTCAAACCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGata                                                                                                                           <  2:763699/140‑3 (MQ=255)

           gATGTCAAACCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGaaa                                                                                                                           <  2:1282241/140‑1 (MQ=255)

            aTGTCAAACCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAAt                                                                                                                          <  2:5933/140‑1 (MQ=255)

              gTCAAACCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGACAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATgg                                                                                                                        >  2:846992/1‑140 (MQ=255)

                 aaaCCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGt                                                                                                                     <  1:860768/140‑1 (MQ=255)

                 aaaCCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGt                                                                                                                     <  1:668149/140‑1 (MQ=255)

                 aaaCCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGt                                                                                                                     <  1:1061587/140‑1 (MQ=255)

                  aaCCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGTGTa                                                                                                                    <  1:1284214/140‑1 (MQ=255)

                  aaCCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTa                                                                                                                    <  2:1246955/140‑1 (MQ=255)

                  aaCCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTa                                                                                                                    >  2:162160/1‑140 (MQ=255)

                  aaCCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGAACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTa                                                                                                                    <  2:546174/140‑1 (MQ=255)

                   aCCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCTCGCGCGACGGTCGGAAATGGCGTaa                                                                                                                   <  2:630107/140‑1 (MQ=255)

                   aCCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTaa                                                                                                                   >  1:932281/1‑140 (MQ=255)

                       cgccgcCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGt                                                                                                                     <  1:1354545/134‑1 (MQ=255)

                       cgccgcCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGt                                                                                                                     >  2:1354545/1‑134 (MQ=255)

                       cgccgcCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAaggta                                                                                                               >  2:1158148/1‑140 (MQ=255)

                       cgccgcCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAaggta                                                                                                               >  1:696212/1‑140 (MQ=255)

                         ccgccAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAaggtagg                                                                                                             <  1:1158148/140‑1 (MQ=255)

                            ccAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTaa                                                                                                          >  1:131173/1‑140 (MQ=255)

                            ccAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTaa                                                                                                          <  1:1137084/140‑1 (MQ=255)

                              aGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACg                                                                                                        <  2:124035/140‑1 (MQ=255)

                                         aTCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTg                                                                                             <  1:1334157/140‑1 (MQ=255)

                                         aTCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTg                                                                                             <  2:929586/140‑1 (MQ=255)

                                         aTCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTg                                                                                             <  2:1154264/140‑1 (MQ=255)

                                         aTCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTg                                                                                             <  1:162160/140‑1 (MQ=255)

                                           ccAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTgcg                                                                                           >  1:673824/1‑140 (MQ=255)

                                           ccAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTgcg                                                                                           <  2:131173/140‑1 (MQ=255)

                                           ccAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTgcg                                                                                           <  1:827099/140‑1 (MQ=255)

                                           ccAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTgcg                                                                                           <  1:40838/140‑1 (MQ=255)

                                                     cAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAaca                                                                                 <  2:696212/140‑1 (MQ=255)

                                                     cAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAaca                                                                                 <  2:669513/140‑1 (MQ=255)

                                                        cacaTCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAg                                                                              <  1:986875/140‑1 (MQ=255)

                                                             ccTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGa                                                                         >  2:1358010/1‑140 (MQ=255)

                                                             ccTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGa                                                                         >  2:1081662/1‑140 (MQ=255)

                                                             ccTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGa                                                                         >  1:1049672/1‑140 (MQ=255)

                                                              ctctGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGaa                                                                        <  1:1208354/140‑1 (MQ=255)

                                                               tctGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAAt                                                                       >  2:1270299/1‑140 (MQ=255)

                                                               tctGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAAt                                                                       >  1:1187983/1‑140 (MQ=255)

                                                                 tGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATaa                                                                     <  2:307772/140‑1 (MQ=255)

                                                                      caAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGa                                                                <  1:513479/140‑1 (MQ=255)

                                                                       aaaaCGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGc                                                                             <  1:1090749/126‑1 (MQ=255)

                                                                       aaaaCGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGc                                                                             >  2:1090749/1‑126 (MQ=255)

                                                                         aaCGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTg                                                             >  1:1298805/1‑140 (MQ=255)

                                                                         aaCGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTg                                                             >  1:111489/1‑140 (MQ=255)

                                                                            gACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAAGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAg                                                          <  1:862411/140‑1 (MQ=255)

                                                                               tGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTg                                                       >  2:746016/1‑140 (MQ=255)

                                                                               tGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTg                                                       >  1:1229226/1‑140 (MQ=255)

                                                                                gTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGt                                                      <  1:643636/140‑1 (MQ=255)

                                                                                gTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGt                                                      <  2:111489/140‑1 (MQ=255)

                                                                                       aGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATc                                               <  1:746016/140‑1 (MQ=255)

                                                                                         tGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAg                                             >  1:1238301/1‑140 (MQ=255)

                                                                                          gATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGc                                            <  2:1187983/140‑1 (MQ=255)

                                                                                           aTAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGcc                                           <  1:1270299/140‑1 (MQ=255)

                                                                                           aTAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGc                                            <  1:553958/139‑1 (MQ=255)

                                                                                           aTAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGc                                            >  2:553958/1‑139 (MQ=255)

                                                                                            tAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGcca                                          <  2:1337099/140‑1 (MQ=255)

                                                                                               cAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGccacca                                       >  2:929551/1‑140 (MQ=255)

                                                                                               cAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGccacca                                       <  1:929551/140‑1 (MQ=255)

                                                                                                aGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCAt                                      <  1:1081662/140‑1 (MQ=255)

                                                                                                  gCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCa                                    >  2:375152/1‑140 (MQ=255)

                                                                                                   cTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCAc                                   >  2:1053460/1‑140 (MQ=255)

                                                                                                     gATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACga                                 >  2:334438/1‑140 (MQ=255)

                                                                                                     gATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACga                                 >  2:1202783/1‑140 (MQ=255)

                                                                                                          aCGCTTCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGatgatg                            <  2:1298805/140‑1 (MQ=255)

                                                                                                               tCCAGTACCGGATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTcgcg                       <  1:846992/140‑1 (MQ=255)

                                                                                                                        ggATGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAg              >  1:1214324/1‑140 (MQ=255)

                                                                                                                          aTGTGACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAgtg            <  2:1238301/140‑1 (MQ=255)

                                                                                                                              gACTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAGTGTCgg        >  2:1287945/1‑140 (MQ=255)

                                                                                                                               aCTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTcgcgc                      <  2:487255/125‑1 (MQ=255)

                                                                                                                               aCTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTcgcgc                      >  1:487255/1‑125 (MQ=255)

                                                                                                                               aCTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAGTGTCggg       >  1:497469/1‑140 (MQ=255)

                                                                                                                                cTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAGTGTCGGGt      <  2:1049672/140‑1 (MQ=255)

                                                                                                                                cTGCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAGTGTCGGGt      >  1:210077/1‑140 (MQ=255)

                                                                                                                                  gCCGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAGTGTCGGGTCt    <  1:1287945/140‑1 (MQ=255)

                                                                                                                                   ccGCGCGCGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAGTGTCGGGTCtt   >  1:88940/1‑140 (MQ=255)

                                                                                                                                    cgcgcgcgACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAGTGTCGGGTCTtc  <  2:673824/140‑1 (MQ=255)

                                                                                                                                     gcgcgcGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAg                  >  2:120945/1‑123 (MQ=255)

                                                                                                                                     gcgcgcGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAg                  <  1:120945/123‑1 (MQ=255)

CCTTCTTCGGTGATGTCAAACCGCGCCGCCAGCACCGGCACATCCAGCAACGCCAGCACATCCTCTGACACAAAACGACTGTCAGGCAGTGATAACAGGCTGATAAACGCTTCCAGTACCGGATGTGACTGCCGCGCACGACGGTCGGAAATGGCGTAAGGTAGGTAACGATCCGCAGGTGCGCTACCAAACACAGCCTGAATAAACGGACTGTAGCTGTCGATATCAGCCACCATCACGATGATGTCGCGCGGAGTAAGTGTCGGGTCTTC  >  NC_000913/2960963‑2961234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A