Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,001,819 T→C V492A (GTT→GCT)  xdhA → putative xanthine dehydrogenase molybdenum‑binding subunit XdhA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,001,8190TC100.0% 277.8 / NA 77V492A (GTT→GCT) xdhAputative xanthine dehydrogenase molybdenum‑binding subunit XdhA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/42);  total (35/42)

GCCTGTCGGCGTAGAAATAGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGTTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAA  >  NC_000913/3001682‑3001954
                                                                                                                                         |                                                                                                                                       
gCCTGTCGGCGTAGAAATAGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGTGGGCTc                                                                                                                                       >  1:1102783/1‑140 (MQ=255)
gCCTGTCGGCGTAGAAATAGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTc                                                                                                                                       >  1:72816/1‑140 (MQ=255)
gCCTGTCGGCGTAGAAATAGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTc                                                                                                                                       >  2:686441/1‑140 (MQ=255)
gCCTGTCGGCGTAGAAATAGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTc                                                                                                                                       >  2:731242/1‑140 (MQ=255)
      cGGCGTAGAAATAGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCa                                                                                                                                 >  1:978396/1‑140 (MQ=255)
           tAGAAATAGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGT‑GGGGCTCCGGTCAGCGACg                                                                                                                           >  2:794092/1‑140 (MQ=255)
              aaaTAGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGtt                                                                                                                         <  1:686441/140‑1 (MQ=255)
               aaTAGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTc                                                                                                                        >  1:825576/1‑140 (MQ=255)
                  aGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTcgcg                                                                                                                     <  1:129427/140‑1 (MQ=255)
                   gCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGACAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGt                                                                                                                    >  2:501628/1‑140 (MQ=255)
                        cgcgcgcCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTAttt                                                                                                               <  2:825576/140‑1 (MQ=255)
                        cgcgcgcCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTAttt                                                                                                               >  1:288841/1‑140 (MQ=255)
                        cgcgcgcCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTAttt                                                                                                               >  1:909807/1‑140 (MQ=255)
                             gcCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACt                                                                                                          <  2:785560/140‑1 (MQ=255)
                                   tgatgaATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGAt                                                                                                    >  1:836032/1‑140 (MQ=255)
                                         aTCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGAc                                                                                              >  2:904801/1‑140 (MQ=255)
                                            aGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGtt                                                                                           >  1:635753/1‑140 (MQ=255)
                                             ggATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTa                                                                                          <  2:836032/140‑1 (MQ=255)
                                               aTGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACg                                                                                        <  2:855745/140‑1 (MQ=255)
                                               aTGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACg                                                                                        <  2:42312/140‑1 (MQ=255)
                                               aTGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACg                                                                                        <  2:978396/140‑1 (MQ=255)
                                                 ggAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGcc                                                                                      >  2:572854/1‑140 (MQ=255)
                                                   aaCCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGt                                                                                    >  1:673209/1‑140 (MQ=255)
                                                        tCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGAt                                                                               >  1:1056930/1‑140 (MQ=255)
                                                        tCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGAt                                                                               >  1:1308218/1‑140 (MQ=255)
                                                            cGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCg                                                                           >  1:829997/1‑140 (MQ=255)
                                                            cGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCg                                                                           <  2:72816/140‑1 (MQ=255)
                                                             gTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCgg                                                                          >  2:92470/1‑140 (MQ=255)
                                                             gTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCgg                                                                          <  1:572854/140‑1 (MQ=255)
                                                             gTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCgg                                                                          >  1:1302141/1‑140 (MQ=255)
                                                             gTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCgg                                                                          <  2:1302141/140‑1 (MQ=255)
                                                              tGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTa                                                                                          <  1:471200/123‑1 (MQ=255)
                                                              tGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTa                                                                                          >  2:471200/1‑123 (MQ=255)
                                                                cAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGgcgc                                                                       >  2:690732/1‑140 (MQ=255)
                                                                 aaaGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCa                                                                      <  2:829997/140‑1 (MQ=255)
                                                                      ggcgCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGc                                                                 >  1:525266/1‑140 (MQ=255)
                                                                        cgcgACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGTGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCt                                                               <  2:1102783/140‑1 (MQ=255)
                                                                        cgcgACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCt                                                               <  2:67671/140‑1 (MQ=255)
                                                                        cgcgACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCt                                                               <  1:163724/140‑1 (MQ=255)
                                                                          cgACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCa                                                             <  2:1308218/140‑1 (MQ=255)
                                                                             cGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGc                                                          <  1:1350537/140‑1 (MQ=255)
                                                                             cGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGc                                                          <  2:430244/140‑1 (MQ=255)
                                                                             cGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGc                                                          <  1:234178/140‑1 (MQ=255)
                                                                             cGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTACGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGc                                                          <  2:322553/140‑1 (MQ=255)
                                                                                aaaTCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCag                                                       <  2:410758/140‑1 (MQ=255)
                                                                                         aGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGtt                                              >  2:244305/1‑140 (MQ=255)
                                                                                                cGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCgcgc                                       <  2:635753/140‑1 (MQ=255)
                                                                                                cGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCgcgc                                       <  2:392278/140‑1 (MQ=255)
                                                                                                  acacCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCct                                     <  1:904801/140‑1 (MQ=255)
                                                                                                     ccGTCTTCTCGCAAATGGTGGCAGAGACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcg                                  >  1:1045125/1‑140 (MQ=255)
                                                                                                     ccGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAATATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcg                                  <  1:731242/140‑1 (MQ=255)
                                                                                                     ccGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcg                                  >  2:1362784/1‑140 (MQ=255)
                                                                                                     ccGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcg                                  >  2:1323075/1‑140 (MQ=255)
                                                                                                      cGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcgc                                 >  1:632302/1‑140 (MQ=255)
                                                                                                         cttctCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcgctgc                              >  2:1240921/1‑140 (MQ=255)
                                                                                                          ttctCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcgctgcg                             <  2:288841/140‑1 (MQ=255)
                                                                                                          ttctCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcgctgcg                             <  1:1240921/140‑1 (MQ=255)
                                                                                                          ttctCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcgctgcg                             <  2:673209/140‑1 (MQ=255)
                                                                                                          ttctCGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCACGCctgcgctgcg                             <  1:690732/140‑1 (MQ=255)
                                                                                                              cGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTTAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGt                         >  2:450019/1‑140 (MQ=255)
                                                                                                              cGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcg                                  <  2:196268/131‑1 (MQ=255)
                                                                                                              cGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcg                                  >  1:196268/1‑131 (MQ=255)
                                                                                                              cGCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGt                         >  1:1298693/1‑140 (MQ=255)
                                                                                                               gCAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTg                        <  1:34908/140‑1 (MQ=255)
                                                                                                                cAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcgctgcg                             <  2:1177388/134‑1 (MQ=255)
                                                                                                                cAAATGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcgctgcg                             >  1:1177388/1‑134 (MQ=255)
                                                                                                                 aaaTGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcgctgcg                             <  2:777173/133‑1 (MQ=255)
                                                                                                                 aaaTGGTGGCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCctgcgctgcg                             >  1:777173/1‑133 (MQ=255)
                                                                                                                    tggtggCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCa                   <  2:1056930/140‑1 (MQ=255)
                                                                                                                      gtggCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTTAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACt                 <  1:450019/140‑1 (MQ=255)
                                                                                                                      gtggCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACt                 <  2:632302/140‑1 (MQ=255)
                                                                                                                      gtggCAGAAACCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACt                 <  1:106089/140‑1 (MQ=255)
                                                                                                                              aaCCGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTaa         <  2:1298693/140‑1 (MQ=255)
                                                                                                                                 cGTGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTAAAag      <  1:92470/140‑1 (MQ=255)
                                                                                                                                   tGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTaa         >  2:1204170/1‑135 (MQ=255)
                                                                                                                                   tGGGGGCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTaa         <  1:1204170/135‑1 (MQ=255)
                                                                                                                                     ggggCTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGaa  <  1:794092/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GCCTGTCGGCGTAGAAATAGCAGGCGCGCGCCTTCTGATGAATCAGGATGGAACCATCAACGTGCAAAGCGGCGCGACGGAAATCGGTCAGGGTGCCGACACCGTCTTCTCGCAAATGGTGGCAGAAACCGTGGGGGTTCCGGTCAGCGACGTTCGCGTTATTTCAACTCAAGATACCGACGTTACGCCGTTCGATCCCGGCGCATTTGCCTCACGCCAGAGCTATGTTGCCGCGCCTGCGCTGCGCAGTGCGGCACTATTATTAAAAGAGAA  >  NC_000913/3001682‑3001954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A