Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,070,708 G→A T179T (ACC→ACT)  fbaA ← fructose‑bisphosphate aldolase class II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,070,7080GA98.8% 294.8 / ‑4.4 85T179T (ACC→ACT) fbaAfructose‑bisphosphate aldolase class II
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base A (46/38);  total (47/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01

ACCGAAGGACGCTGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCGGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTGAGAAGAGAACAGCGGCTTACCGG  >  NC_000913/3070573‑3070844
                                                                                                                                       |                                                                                                                                        
aCCGAAGGACGCTGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGc                                                                                                                                      >  1:275621/1‑140 (MQ=255)
  cGAAGGACGCTGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCaa                                                                                                                                    >  2:703545/1‑140 (MQ=255)
      ggACGCTGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCa                                                                                                                                <  1:8412/140‑1 (MQ=255)
      ggACGCTGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCa                                                                                                                                >  1:1078140/1‑140 (MQ=255)
        aCGCTGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGt                                                                                                                              >  1:909562/1‑140 (MQ=255)
         cGCTGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGtt                                                                                                                             >  1:1294999/1‑140 (MQ=255)
           cTGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCg                                                                                                                           >  1:538512/1‑140 (MQ=255)
            tGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGa                                                                                                                          >  1:135139/1‑140 (MQ=255)
            tGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGa                                                                                                                          <  2:331583/140‑1 (MQ=255)
                      aaaCGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGt                                                                                                                >  1:963219/1‑140 (MQ=255)
                      aaaCGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGt                                                                                                                >  2:461010/1‑140 (MQ=255)
                      aaaCGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGt                                                                                                                >  2:931233/1‑140 (MQ=255)
                        aCGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCa                                                                                                              >  1:1285818/1‑140 (MQ=255)
                        aCGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCa                                                                                                              >  1:97786/1‑140 (MQ=255)
                        aCGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCa                                                                                                              >  2:851261/1‑140 (MQ=255)
                           cgGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATg                                                                                                            >  2:648016/1‑139 (MQ=255)
                           cgGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATg                                                                                                            <  1:648016/139‑1 (MQ=255)
                           cgGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGc                                                                                                           <  2:1294999/140‑1 (MQ=255)
                           cgGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGc                                                                                                           <  1:396027/140‑1 (MQ=255)
                             ggCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGc                                                                                                           >  1:984929/1‑138 (MQ=255)
                             ggCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGc                                                                                                           <  2:984929/138‑1 (MQ=255)
                             ggCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCg                                                                                                         >  1:531576/1‑140 (MQ=255)
                               cTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGAt                                                                                                       <  1:960583/140‑1 (MQ=255)
                                  aTTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGAtttt                                                                                                    >  2:1106110/1‑140 (MQ=255)
                                        cTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACAt                                                                                              <  2:538512/140‑1 (MQ=255)
                                         tCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATg                                                                                             <  2:909562/140‑1 (MQ=255)
                                            gTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATgcgc                                                                                          <  2:963219/140‑1 (MQ=255)
                                              tCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTc                                                                                        <  1:461010/140‑1 (MQ=255)
                                              tCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTc                                                                                        <  1:538323/140‑1 (MQ=255)
                                              tCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTc                                                                                        <  1:329982/140‑1 (MQ=255)
                                              tCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTc                                                                                        <  1:781306/140‑1 (MQ=255)
                                                  tgtATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAgg                                                                                    >  2:1267/1‑140 (MQ=255)
                                                      tGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTAtt                                                                                >  2:721703/1‑140 (MQ=255)
                                                      tGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTAtt                                                                                <  1:1267/140‑1 (MQ=255)
                                                       gCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTAttt                                                                               >  1:1319600/1‑140 (MQ=255)
                                                       gCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTAttt                                                                               >  1:277164/1‑140 (MQ=255)
                                                       gCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTAttt                                                                               >  1:1312150/1‑140 (MQ=255)
                                                            aTCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGc                                                                          >  2:742259/1‑140 (MQ=255)
                                                               aaCGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGa                                                                       <  2:1078140/140‑1 (MQ=255)
                                                                  gTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGAttt                                                                    <  1:798021/140‑1 (MQ=255)
                                                                  gTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGAttt                                                                    <  1:703545/140‑1 (MQ=255)
                                                                      tCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGAt                                                                >  2:1193429/1‑140 (MQ=255)
                                                                       ccGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATg                                                               >  2:487334/1‑140 (MQ=255)
                                                                       ccGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATg                                                               <  2:1319600/140‑1 (MQ=255)
                                                                              ggTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCtt                                                        >  2:395917/1‑140 (MQ=255)
                                                                                  tACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCag                                                    <  1:931233/140‑1 (MQ=255)
                                                                                    cAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCagag                                                  <  2:435403/140‑1 (MQ=255)
                                                                                        gCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGAttc                                              >  2:1079976/1‑140 (MQ=255)
                                                                                         cAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCagag                                                  >  1:75272/1‑135 (MQ=255)
                                                                                         cAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCagag                                                  <  2:75272/135‑1 (MQ=255)
                                                                                         cAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGAttct                                             >  1:58232/1‑140 (MQ=255)
                                                                                          aGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGAttctt                                            >  1:791721/1‑140 (MQ=255)
                                                                                            aaGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTTGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCa                                          >  2:844806/1‑140 (MQ=255)
                                                                                            aaGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCa                                          >  2:36450/1‑140 (MQ=255)
                                                                                            aaGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCa                                          <  2:277164/140‑1 (MQ=255)
                                                                                            aaGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCa                                          <  2:791721/140‑1 (MQ=255)
                                                                                                 tCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCa                                          <  2:1200575/135‑1 (MQ=255)
                                                                                                 tCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCa                                          >  1:1200575/1‑135 (MQ=255)
                                                                                                 tCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAg                                     >  2:691082/1‑140 (MQ=255)
                                                                                                 tCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAg                                     >  2:1360824/1‑140 (MQ=255)
                                                                                                 tCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAg                                     >  1:1143136/1‑140 (MQ=255)
                                                                                                 tCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAg                                     >  1:502183/1‑140 (MQ=255)
                                                                                                 tCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAg                                     >  2:631709/1‑140 (MQ=255)
                                                                                                   cATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAgg                                    >  2:350575/1‑139 (MQ=255)
                                                                                                   cATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAgg                                    <  1:350575/139‑1 (MQ=255)
                                                                                                   cATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGt                                   <  2:502183/140‑1 (MQ=255)
                                                                                                     tgtgGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCg                                 <  1:641881/140‑1 (MQ=255)
                                                                                                     tgtgGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCg                                 <  2:275621/140‑1 (MQ=255)
                                                                                                       tgGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGAt                               <  1:742259/140‑1 (MQ=255)
                                                                                                       tgGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGAt                               <  2:1145935/140‑1 (MQ=255)
                                                                                                       tgGCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGAt                               <  1:647929/140‑1 (MQ=255)
                                                                                                         gCTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCa                             <  1:631709/140‑1 (MQ=255)
                                                                                                          cTGTTGTCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCAt                            >  2:72436/1‑140 (MQ=255)
                                                                                                            gttgtCCACGCCGTCTTCTTCACCACCGGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCAtgt                          >  2:843772/1‑140 (MQ=255)
                                                                                                              tgtCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGa                                        <  1:594211/124‑1 (MQ=255)
                                                                                                              tgtCCACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGa                                        >  2:594211/1‑124 (MQ=255)
                                                                                                                 ccACGCTGTCTTCTTCACCACCGGTGCAACCCAGTTCGATGTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATGCGGCAGAAAGGGCGATCATGTgagaa                     <  2:1011125/140‑1 (MQ=255)
                                                                                                                  cACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTgagaag                    >  2:79909/1‑140 (MQ=255)
                                                                                                                  cACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTgagaag                    >  1:941485/1‑140 (MQ=255)
                                                                                                                  cACGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTgagaag                    >  1:670356/1‑140 (MQ=255)
                                                                                                                    cGCCGTCTTCTTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTgagaagag                  >  1:1112495/1‑140 (MQ=255)
                                                                                                                         tcttctTCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTGAGAAGAGAACAg             <  1:1193429/140‑1 (MQ=255)
                                                                                                                          cttcttCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTGAGAAGAGAACAGc            <  2:1285818/140‑1 (MQ=255)
                                                                                                                          cttcttCACCACCAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTGAGAAGAGAACAGc            >  1:862068/1‑140 (MQ=255)
                                                                                                                                 accaccAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTGAGAAGAGAACAGCGGCTTAc     <  2:531576/140‑1 (MQ=255)
                                                                                                                                    accAGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTGAGAAGAGAACAGCGGCTTACCgg  <  2:941485/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
ACCGAAGGACGCTGCGATGGTGAAACGCGGGCTGATTTTGCTCAGTTCGGTGTATGCGTAATCAACGTCTTCCGGCTGGGTGTACAGTGCAGAAGCGTCCATGTGGCTGTTGTCCACGCCGTCTTCTTCACCACCGGTGCAACCCAGTTCGATTTCCAGAGTCATGCCGATTTTGGACATGCGCTCCAGGTATTTAGAGCAGATTTCGATGTTCTCTTGCAGAGATTCTTCAGACAGGTCGATCATGTGAGAAGAGAACAGCGGCTTACCGG  >  NC_000913/3070573‑3070844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A