Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,667,956 T→C A411A (GCA→GCG)  ccp ← cytochrome c peroxidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,667,9560TC100.0% 246.1 / NA 68A411A (GCA→GCG) ccpcytochrome c peroxidase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/35);  total (33/35)

TACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGTGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGTCTTTTTTCAGCCCCAACGGT  >  NC_000913/3667819‑3668091
                                                                                                                                         |                                                                                                                                       
tACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGGAGTACGgcgc                                                                                                                                       >  1:217718/1‑140 (MQ=255)
tACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGgcgc                                                                                                                                       >  2:918315/1‑140 (MQ=255)
   cccccGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGt                                                                                                                                    <  1:417740/139‑1 (MQ=255)
     cccGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTa                                                                                                                                  >  1:1042792/1‑140 (MQ=255)
     cccGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTa                                                                                                                                  >  2:1332663/1‑140 (MQ=255)
        gTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAg                                                                                                                               >  1:351460/1‑140 (MQ=255)
        gTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAg                                                                                                                               >  2:434910/1‑140 (MQ=255)
        gTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAg                                                                                                                               <  2:1079447/140‑1 (MQ=255)
        gTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAg                                                                                                                               >  1:483800/1‑140 (MQ=255)
        gTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAg                                                                                                                               <  2:351460/140‑1 (MQ=255)
         ttCAGACTGTGCAGGAAAGCCACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGc                                                                                                                              >  1:619396/1‑140 (MQ=255)
          tCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCa                                                                                                                             <  2:843804/140‑1 (MQ=255)
            aGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAAc                                                                                                                           <  2:1122744/140‑1 (MQ=255)
            aGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAAc                                                                                                                           <  2:1229275/140‑1 (MQ=255)
             gACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACg                                                                                                                          <  1:1186627/140‑1 (MQ=255)
                  tgCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACg                                                                                                                     >  1:129439/1‑140 (MQ=255)
                       gAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAAc                                                                                                                <  2:1331517/140‑1 (MQ=255)
                       gAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAAc                                                                                                                <  2:121647/140‑1 (MQ=255)
                          aGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCgg                                                                                                             >  1:652609/1‑140 (MQ=255)
                            cTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGt                                                                                                           >  1:229067/1‑140 (MQ=255)
                            cTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGt                                                                                                           >  1:61007/1‑140 (MQ=255)
                                       tcCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACg                                                                                                >  2:1073430/1‑140 (MQ=255)
                                         cacaTCCTCCTGCGGCAGTTCTTTGCCTCCCTGATATCGCAGCGTCAGTTTCTCCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACTCa                                                                                              <  2:619396/140‑1 (MQ=255)
                                            aTCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAAtt                                                                                           >  1:915871/1‑140 (MQ=255)
                                              cctcctGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCAATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTa                                                                                         >  2:1286024/1‑140 (MQ=255)
                                                 cctGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCa                                                                                      <  1:1073430/140‑1 (MQ=255)
                                                 cctGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCa                                                                                      <  2:652609/140‑1 (MQ=255)
                                                 cctGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCa                                                                                      <  2:792103/140‑1 (MQ=255)
                                                  ctGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCAc                                                                                     >  1:779942/1‑140 (MQ=255)
                                                  ctGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCAc                                                                                     >  2:824737/1‑140 (MQ=255)
                                                   tGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACg                                                                                    <  2:61007/140‑1 (MQ=255)
                                                     cGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGct                                                                                  >  2:471468/1‑140 (MQ=255)
                                                     cGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGct                                                                                  <  2:483800/140‑1 (MQ=255)
                                                     cGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGct                                                                                  <  1:861544/140‑1 (MQ=255)
                                                      ggCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACg                                                                                    <  2:944313/137‑1 (MQ=255)
                                                      ggCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACg                                                                                    >  1:944313/1‑137 (MQ=255)
                                                           ctctTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTcttctt                                                                            >  1:418095/1‑140 (MQ=255)
                                                           ctctTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTcttctt                                                                            <  2:229067/140‑1 (MQ=255)
                                                            tctTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGct                                                                                  <  2:480276/133‑1 (MQ=255)
                                                            tctTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGct                                                                                  >  1:480276/1‑133 (MQ=255)
                                                               ttGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGt                                                                        <  1:434910/140‑1 (MQ=255)
                                                               ttGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCGCTTCTTTAGt                                                                        <  1:477131/140‑1 (MQ=255)
                                                               ttGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCAATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGt                                                                        <  1:1286024/140‑1 (MQ=255)
                                                                      ccTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTc                                                                 >  2:877914/1‑140 (MQ=255)
                                                                       cTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCa                                                                <  2:455814/140‑1 (MQ=255)
                                                                       cTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCa                                                                <  2:418044/140‑1 (MQ=255)
                                                                       cTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCa                                                                <  2:1274037/140‑1 (MQ=255)
                                                                          aTAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATAc                                                             >  1:633483/1‑140 (MQ=255)
                                                                          aTAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATAc                                                             >  1:81488/1‑140 (MQ=255)
                                                                            aGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATa                                                              <  2:1109568/137‑1 (MQ=255)
                                                                            aGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATa                                                              >  1:1109568/1‑137 (MQ=255)
                                                                                cagcaTCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCaa                                                       >  1:275901/1‑140 (MQ=255)
                                                                                cagcaTCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCaa                                                       >  1:879757/1‑140 (MQ=255)
                                                                                 agcaTCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAat                                                      >  1:839866/1‑140 (MQ=255)
                                                                                    aTCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATc                                                   >  1:959673/1‑140 (MQ=255)
                                                                                      cAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATccg                                                 <  2:839866/140‑1 (MQ=255)
                                                                                           tCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATccgccgcc                                            <  1:471468/140‑1 (MQ=255)
                                                                                                   ccGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTc                                    >  2:601039/1‑140 (MQ=255)
                                                                                                           cGTCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGt                            >  1:1118210/1‑140 (MQ=255)
                                                                                                             tCGGCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTa                          <  2:633483/140‑1 (MQ=255)
                                                                                                                gCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAg                       >  1:306953/1‑140 (MQ=255)
                                                                                                                gCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAg                       >  1:711386/1‑140 (MQ=255)
                                                                                                                gCACGTCACCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTCCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAg                       >  1:34750/1‑140 (MQ=255)
                                                                                                                       aCCGCGATGGAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGTCttttt                <  1:1332663/140‑1 (MQ=255)
                                                                                                                               ggAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGTCTTTTTTCAGcccc        <  2:418095/140‑1 (MQ=255)
                                                                                                                                gAAGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGTCTTTTTTCAGCCCCa       >  1:1098953/1‑140 (MQ=255)
                                                                                                                                 aaGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGTCTTTTTTCAGCCCCaa      <  2:81488/140‑1 (MQ=255)
                                                                                                                                 aaGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGTCTTTTTTCAGCCCCaa      <  1:918315/140‑1 (MQ=255)
                                                                                                                                 aaGTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGTCTTTTTTCAGCCCCaa      <  2:129439/140‑1 (MQ=255)
                                                                                                                                   gTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGt                      <  1:1236047/122‑1 (MQ=255)
                                                                                                                                   gTACGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGt                      >  2:1236047/1‑122 (MQ=255)
                                                                                                                                     aCGGCGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGTCTTTTTTCAGCCCCAACGGt  <  2:879757/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
TACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGTCGGCACGTCACCGCGATGGAAGTACGGTGCCGTTAAAGCAACGTTACGTAAACCGGGTACTTTCTGACGCAATTTATCACGCTCTTCTTTAGTCACATTCATACGACCAATATCCGCCGCCGTAATTTCCCCAAAGTTAAAGTCTTTTTTCAGCCCCAACGGT  >  NC_000913/3667819‑3668091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A