Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F28 I1 R1 169 80.7 2736954 99.0% 2709584 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,846,450 T→C T240A (ACA→GCA)  uhpT ← hexose‑6‑phosphate:phosphate antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,846,4500TC100.0% 290.7 / NA 79T240A (ACA→GCA) uhpThexose‑6‑phosphate:phosphate antiporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (45/34);  total (45/34)

TGACCACTGGTCGATACCAATACGTACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGTCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGACGGGAAGATAAAC  >  NC_000913/3846322‑3846586
                                                                                                                                |                                                                                                                                        
tGACCACTGGTCGATACCAATACGTACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCct                                                                                                                               <  2:914198/140‑1 (MQ=255)
 gACCACTGGTCGATACCAATACGTACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTCGATTCTGCctct                                                                                                                                      >  2:1269340/1‑132 (MQ=255)
 gACCACTGGTCGATACCAATACGTACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTCGATTCTGCctct                                                                                                                                      <  1:1269340/132‑1 (MQ=255)
 gACCACTGGTCGATACCAATACGTACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCctc                                                                                                                              >  2:456938/1‑140 (MQ=255)
    cACTGGTCGATACCAATACGTACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTc                                                                                                                           >  1:836747/1‑140 (MQ=255)
       tGGTCGATACCAATACGTACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCt                                                                                                                        >  1:45890/1‑140 (MQ=255)
            gATACCAATACGTACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGAtct                                                                                                                   >  1:1292549/1‑140 (MQ=255)
                    tACGTACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCg                                                                                                           <  2:1114912/140‑1 (MQ=255)
                       gtcccACATAGAGGTAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAAc                                                                                                        <  2:836747/137‑1 (MQ=255)
                        tACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACa                                                                                                       >  2:526464/1‑140 (MQ=255)
                        tACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACa                                                                                                       >  2:137544/1‑140 (MQ=255)
                         aCCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACa                                                                                                       <  2:359484/139‑1 (MQ=255)
                         aCCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACa                                                                                                       >  1:359484/1‑139 (MQ=255)
                         aCCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAg                                                                                                      >  2:1234076/1‑140 (MQ=255)
                         aCCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAg                                                                                                      >  2:1267200/1‑140 (MQ=255)
                           cacaTAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGtt                                                                                                    >  1:219905/1‑140 (MQ=255)
                            acaTAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGttc                                                                                                   >  1:632759/1‑140 (MQ=255)
                              aTAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGttctt                                                                                                 <  1:662770/140‑1 (MQ=255)
                                 gagGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAg                                                                                              <  2:1135581/140‑1 (MQ=255)
                                 gagGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAg                                                                                              >  1:1169315/1‑140 (MQ=255)
                                  agGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGc                                                                                             >  1:3296/1‑140 (MQ=255)
                                     aaaaTGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCt                                                                                            >  2:743008/1‑138 (MQ=255)
                                     aaaaTGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCt                                                                                            <  1:743008/138‑1 (MQ=255)
                                       aaTGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGc                                                                                        <  2:3296/140‑1 (MQ=255)
                                       aaTGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGc                                                                                        >  1:31063/1‑140 (MQ=255)
                                        aTGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGcc                                                                                       <  1:456938/140‑1 (MQ=255)
                                        aTGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGcc                                                                                       <  2:219905/140‑1 (MQ=255)
                                          gTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGa                                                                                     <  2:45890/140‑1 (MQ=255)
                                            tGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCgggc                                                                                   <  2:1152291/140‑4 (MQ=255)
                                            tGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAgg                                                                                   >  2:109578/1‑140 (MQ=255)
                                              gCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGcc                                                                                 >  2:1203616/1‑140 (MQ=255)
                                              gCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGcc                                                                                 >  2:695745/1‑140 (MQ=255)
                                                            ccAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCgggg                                                                   >  2:976922/1‑140 (MQ=255)
                                                              aGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAg                                                                 >  1:71031/1‑140 (MQ=255)
                                                               gATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGt                                                                <  1:137544/140‑1 (MQ=255)
                                                                  cACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGc                                                             <  1:65535/140‑1 (MQ=255)
                                                                  cACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGc                                                             <  1:976922/140‑1 (MQ=255)
                                                                  cACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGc                                                             <  1:695745/140‑1 (MQ=255)
                                                                      ttGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGcc                                                         >  1:317747/1‑140 (MQ=255)
                                                                       tGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCg                                                        >  1:76681/1‑140 (MQ=255)
                                                                       tGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCg                                                        <  2:71031/140‑1 (MQ=255)
                                                                          ttttCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTTAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTaa                                                     >  2:1185363/1‑140 (MQ=255)
                                                                          ttttCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTaa                                                     >  2:375246/1‑140 (MQ=255)
                                                                            ttCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACg                                                   >  2:859098/1‑140 (MQ=255)
                                                                                gCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAgg                                               <  2:205445/140‑1 (MQ=255)
                                                                                      aCTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATa                                         >  2:347387/1‑140 (MQ=255)
                                                                                      aCTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATa                                         >  1:291090/1‑140 (MQ=255)
                                                                                      aCTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATa                                         >  2:1201014/1‑140 (MQ=255)
                                                                                      aCTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATa                                         >  1:176578/1‑140 (MQ=255)
                                                                                       cTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATaa                                        <  2:76681/140‑1 (MQ=255)
                                                                                               aGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACa                                >  1:1116701/1‑140 (MQ=255)
                                                                                               aGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACa                                >  1:111001/1‑140 (MQ=255)
                                                                                               aGATCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACa                                >  2:367214/1‑140 (MQ=255)
                                                                                                 aTCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAAt                              <  2:1116701/140‑1 (MQ=255)
                                                                                                 aTCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAAt                              >  2:595952/1‑140 (MQ=255)
                                                                                                 aTCTGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAAt                              <  1:1201014/140‑1 (MQ=255)
                                                                                                    tGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATaa                                        >  2:289553/1‑127 (MQ=255)
                                                                                                    tGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATaa                                        <  1:289553/127‑1 (MQ=255)
                                                                                                    tGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAg                           >  1:759790/1‑140 (MQ=255)
                                                                                                    tGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAg                           >  1:472392/1‑140 (MQ=255)
                                                                                                    tGCCACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAg                           >  1:96259/1‑140 (MQ=255)
                                                                                                      ccACTTGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAgcg                         >  1:1156404/1‑140 (MQ=255)
                                                                                                          ttGGTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGAt                     >  2:67537/1‑140 (MQ=255)
                                                                                                             gTCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAAt                  <  2:1169315/140‑1 (MQ=255)
                                                                                                              tCATATCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATc                 >  2:108204/1‑140 (MQ=255)
                                                                                                                atatCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGcgcg                       <  1:1104712/132‑1 (MQ=255)
                                                                                                                atatCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGcgcg                       >  2:1104712/1‑132 (MQ=255)
                                                                                                                atatCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGa               <  1:595952/140‑1 (MQ=255)
                                                                                                                 tatCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGAc              <  1:367214/140‑1 (MQ=255)
                                                                                                                 tatCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGAc              <  1:859098/140‑1 (MQ=255)
                                                                                                                 tatCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGAc              >  2:572766/1‑140 (MQ=255)
                                                                                                                  atCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGACg             <  1:1203616/140‑1 (MQ=255)
                                                                                                                   tCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGACgg            <  1:675160/140‑1 (MQ=255)
                                                                                                                   tCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGACgg            <  2:735031/140‑1 (MQ=255)
                                                                                                                   tCGGTAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGACgg            <  2:1156404/140‑1 (MQ=255)
                                                                                                                       tAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGACGGGAAg        >  1:692517/1‑140 (MQ=255)
                                                                                                                       tAGATTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGACGGGAAg        <  2:692517/140‑1 (MQ=255)
                                                                                                                          aTTCTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGACGGGAAGATa     >  1:149186/1‑140 (MQ=255)
                                                                                                                             cTGCCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGACGGGAAGATAAAc  <  2:317747/140‑1 (MQ=255)
                                                                                                                                |                                                                                                                                        
TGACCACTGGTCGATACCAATACGTACCACATAGAGGAAAATGTTGGCGAAGCACAGCAGCCAGATCACTTTGTTTTTCAGCACATACTCAACAAAGATCTGCCACTTGGTCATATCGGTAGATTCTGTCTCTTTGTCCTCTTCGCTGATCTCCTCGCCGAACAGTTCTTCAGCTTTGCCGAGGCCATAAGATTCCGGGGAGTCGCTGCCGTAACGCAGGCCGATAAAACCGACAATCAGCGCGATAATCGACGGGAAGATAAAC  >  NC_000913/3846322‑3846586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A