Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
116 |
49.4 |
1663006 |
99.2% |
1649701 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,102,751 |
Δ1 bp |
coding (102/720 nt) |
trmI ← |
tRNA m(7)G46 methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,102,750 | 0 | C | . | 100.0%
| 97.4
/ NA
| 24 | coding (103/720 nt) | trmI | tRNA m(7)G46 methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (13/11); total (13/11) |
TTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTCCTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGTTTTTCATAAAGGTTTAGTCGCTTGTGAAAGTGTTCTGAAA > NC_000913/3102612‑3102885
|
ttGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTct > 1:580501/1‑139 (MQ=255)
tGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTctg > 1:173219/1‑138 (MQ=255)
gCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTgg > 1:278994/1‑140 (MQ=255)
aaaCCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGGAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTggcgg > 2:55344/1‑140 (MQ=255)
aTCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGgcgc > 2:391224/1‑137 (MQ=255)
aTCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGgcgc < 1:391224/137‑1 (MQ=255)
aTCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGcaca > 2:614817/1‑140 (MQ=255)
aTCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGcaca > 1:493852/1‑140 (MQ=255)
aTCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGcaca > 1:378290/1‑140 (MQ=255)
tctcAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACaa < 2:580501/140‑1 (MQ=255)
aGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTa > 2:59719/1‑140 (MQ=255)
cgcTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGgcg > 1:234070/1‑140 (MQ=255)
cGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTggg > 2:40174/1‑140 (MQ=255)
cgGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTtcat > 1:245917/1‑140 (MQ=255)
gAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCaaa < 2:245917/140‑1 (MQ=255)
aTCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGTCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTc < 1:55344/140‑1 (MQ=255)
cATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGa > 1:708214/1‑140 (MQ=255)
gAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGtt < 1:83612/140‑1 (MQ=255)
aaCTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGttt < 2:378290/140‑1 (MQ=255)
aCGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGTTTTTCATa < 2:234070/140‑1 (MQ=255)
aCGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGTTTTTCATa < 2:493852/140‑1 (MQ=255)
aCCGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGTTTTTCATAAAGGTTTAg < 2:278994/140‑1 (MQ=255)
cGGCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGTTTTTCATAAAGGTTTAGTc < 1:161851/140‑1 (MQ=255)
gCCAGTAGTTTTCCAGCGCATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGTTTTTCATAAAGGTTTAGTCGc > 1:251872/1‑140 (MQ=255)
cATGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGTTTTTCATAAAGGTTTAGTCGCTTGTGAAAGTGTTCTGaa > 1:230120/1‑140 (MQ=255)
aTGTT‑CTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGTTTTTCATAAAGGTTTAGTCGCTTGTGAAAGTGTTCTGaaa < 1:59719/140‑1 (MQ=255)
|
TTGCCACCAGCGACGCCCCCATGCCAAAACCAATCTCAAGCGTCACCGGCGCTTCACGGCCAAAAAGCGCGGGGAAATCCAGCATATCTTCGCTGAACTCAACGCCCATCACCGGCCAGTAGTTTTCCAGCGCATGTTCCTGGCCTTTGGTCAGTCGCCCCTGGCGGCGCACAAAACTACGGATACGGCGCAGTGGGCGGCCGTTTTCATCAAATTCCGGTGAAATGACGTCGTTTTTCATAAAGGTTTAGTCGCTTGTGAAAGTGTTCTGAAA > NC_000913/3102612‑3102885
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
