Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F28 I1 R1	116	49.4	1663006	99.2%	1649701	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,686,902	T→C	T758A (ACC→GCC)	bcsC ←	cellulose biosynthesis protein BcsC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,686,902	0	T	C	100.0%	134.6 / NA	37	T758A (ACC→GCC)	bcsC	cellulose biosynthesis protein BcsC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (19/18); total (19/18)

CCACCGGTGCCGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGTCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGATCGCCCGCCTGCGCTTCAAACTTCGCACCATCACGCAGCA  >  NC_000913/3686775‑3687036

ccaccGGTGCCGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAg                                                                                                                                     <  2:660209/131‑1 (MQ=255)

ccaccGGTGCCGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAg                                                                                                                                     >  1:660209/1‑131 (MQ=255)

 caccGGTGCCGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAg                                                                                                                           <  2:262531/140‑1 (MQ=255)

    cGGTGCCGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGgtg                                                                                                                        >  2:160953/1‑140 (MQ=255)

     ggTGCCGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGgtgt                                                                                                                       >  2:770441/1‑140 (MQ=255)

     ggTGCCGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGgtgt                                                                                                                       >  2:486489/1‑140 (MQ=255)

       tGCCGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCg                                                                                                                     <  2:215511/140‑1 (MQ=255)

         ccGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGtt                                                                                                                   >  1:263124/1‑140 (MQ=255)

         ccGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGtt                                                                                                                   >  2:362506/1‑140 (MQ=255)

           gCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTAt                                                                                                                 >  1:144528/1‑140 (MQ=255)

            cTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATc                                                                                                                >  2:484720/1‑140 (MQ=255)

            cTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATc                                                                                                                >  1:93729/1‑140 (MQ=255)

                              ggCTAAAGGGTAACGTTAAAATCCTGCTGGCGATAGAGGTCCGCCGCAGCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGt                                                                                              <  2:616560/139‑1 (MQ=255)

                               gCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTc                                                                                             >  1:760657/1‑140 (MQ=255)

                                   aaGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCacac                                                                                         <  2:11604/140‑1 (MQ=255)

                                             ttAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGAc                                                                               >  1:703495/1‑140 (MQ=255)

                                             ttAAGATCCTGCTGGCGATAGAGGTACGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGAc                                                                               >  2:356733/1‑140 (MQ=255)

                                               aaGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCa                                                                             <  1:160953/140‑1 (MQ=255)

                                                    ccTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCg                                                                        <  2:613306/140‑1 (MQ=255)

                                                                     tCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAg                                                       >  2:456487/1‑140 (MQ=255)

                                                                     gccgccgCGTCGCTGCGCACGCCGCGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGGGGCGTTATCCTGCGGGCGCGTCGTGGTCACGCCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAg                                                       <  2:273886/139‑1 (MQ=255)

                                                                        gccgcATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAgcgc                                                    <  1:193966/140‑1 (MQ=255)

                                                                        gccgcATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAgcgc                                                    <  2:760657/140‑1 (MQ=255)

                                                                        gccgcATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAgcgc                                                    <  2:745266/140‑1 (MQ=255)

                                                                        gccgcATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAgcgc                                                    <  1:456487/140‑1 (MQ=255)

                                                                        gccgcATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAgcgc                                                    <  1:356733/140‑1 (MQ=255)

                                                                         ccgcATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTTGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGcc                                                   >  2:790852/1‑140 (MQ=255)

                                                                            cATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGc                                                >  2:680065/1‑140 (MQ=255)

                                                                                gCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTg                                            <  1:341448/140‑1 (MQ=255)

                                                                                  tGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGa                                          <  1:362506/140‑1 (MQ=255)

                                                                                    cgcACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTAGGGTAAAGGTTTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGATc                                        >  2:573631/1‑140 (MQ=255)

                                                                                         gCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGATcgcccg                                   >  1:548000/1‑140 (MQ=255)

                                                                                                   aGCCAGTCATCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGATCGCCCGCCTGCGCTTc                         >  2:492747/1‑140 (MQ=255)

                                                                                                           aTCTTTCTCGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGATCGCCCGCCTGCGCTTCAAACTTCg                 <  1:770441/140‑1 (MQ=255)

                                                                                                              tttCTCGTCGTTACGGGCCAGTTGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGATCGCCCGCCTGCGCTTCAAACTTCGCAc              <  1:790852/140‑1 (MQ=255)

                                                                                                                 ctcGTCGTTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGATCGCCCGCCTGCGCTTCAAACTTCGCACCAt           <  1:492747/140‑1 (MQ=255)

                                                                                                                   cgtcgtTACGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGATCGCCCGCCTGCGCTTCAAACTTCGCACCATCa         <  1:483021/140‑1 (MQ=255)

                                                                                                                          aCGGGCCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGATCGCCCGCCTGCGCTTCAAACTTCGCACCATCACgcagca  >  2:668901/1‑140 (MQ=255)

CCACCGGTGCCGCTCGAACCCCAGTAATCGTGCTCAAGGGTGACGTTAAGATCCTGCTGGCGATAGAGGTCCGCCGCATCGCTGCGCACGCCACGTTTCAGCCAGTCATCTTTCTCGTCGTTACGGGTCAGTCGGGTAAAGGTGTCGTTATCCTGCGGACGCGTCGTAGTCACACCGGATGCGACCATGGCGTCTTTGTAGGTTTCCAGCGCCTGCGTTGGATCGCCCGCCTGCGCTTCAAACTTCGCACCATCACGCAGCA  >  NC_000913/3686775‑3687036

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A