Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	143	98.3	3330986	99.3%	3307669	138.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,103,423	C→T	E363K (GAA→AAA)	wbbK ←	putative lipopolysaccharide biosynthesis protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,103,423	0	C	T	100.0%	365.5 / NA	101	E363K (GAA→AAA)	wbbK	putative lipopolysaccharide biosynthesis protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (53/48); total (53/48)

Only 100 of 101 total aligned reads displayed.

GTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTT  >  NC_000913/2103290‑2103558

gTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCaaa                                                                                                                                   <  1:947173/140‑1 (MQ=255)

 tACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAAc                                                                                                                                  <  2:412834/140‑1 (MQ=255)

 tACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAAc                                                                                                                                  <  1:647726/140‑1 (MQ=255)

 tACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAAc                                                                                                                                  <  2:853962/140‑1 (MQ=255)

  aCGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAA‑TTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAAccc                                                                                                                                <  2:1169026/140‑1 (MQ=255)

          cTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAAt                                                                                                                         <  1:1575345/140‑1 (MQ=255)

              tAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACAt                                                                                                                     <  1:741109/140‑1 (MQ=255)

               aGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACAtt                                                                                                                    <  1:1524229/140‑1 (MQ=255)

                   cTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAAccc                                                                                                                                <  2:543301/124‑1 (MQ=255)

                   cTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAAccc                                                                                                                                >  1:543301/1‑124 (MQ=255)

                   cTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCa                                                                                                                >  1:948551/1‑140 (MQ=255)

                   cTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCa                                                                                                                >  2:1029095/1‑140 (MQ=255)

                   cTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCa                                                                                                                >  2:1155669/1‑140 (MQ=255)

                   cTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCa                                                                                                                >  1:815918/1‑140 (MQ=255)

                   cTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCa                                                                                                                >  2:408011/1‑140 (MQ=255)

                        cGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACg                                                                                                           >  2:81249/1‑140 (MQ=255)

                           cAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATa                                                                                                        >  2:213911/1‑140 (MQ=255)

                                 tAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGaa                                                                                                  <  1:1235060/140‑1 (MQ=255)

                                   aGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAAt                                                                                                <  1:876731/140‑1 (MQ=255)

                                    gATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAAtt                                                                                               <  2:1643655/140‑1 (MQ=255)

                                      ttttCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGa                                                                                                          <  2:1560552/127‑1 (MQ=255)

                                      ttttCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGa                                                                                                          >  1:1560552/1‑127 (MQ=255)

                                        ttCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCa                                                                                           >  2:1267401/1‑140 (MQ=255)

                                        ttCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCa                                                                                           <  1:1643571/140‑1 (MQ=255)

                                        ttCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCa                                                                                           >  2:303964/1‑140 (MQ=255)

                                           gAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCa                                                                                        <  2:1320689/140‑1 (MQ=255)

                                           gAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCa                                                                                        <  2:9417/140‑1 (MQ=255)

                                               aaTTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAgaga                                                                                    <  1:408011/140‑1 (MQ=255)

                                                             gTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAgg                                                                      >  1:281822/1‑140 (MQ=255)

                                                              tCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGt                                                                     <  1:303964/140‑1 (MQ=255)

                                                              tCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGt                                                                     <  2:1010917/140‑1 (MQ=255)

                                                                 tCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTAc                                                                  <  1:1093249/140‑1 (MQ=255)

                                                                        cGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCGACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCtttttt                                                           >  1:1097865/1‑140 (MQ=255)

                                                                        cGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTg                                                                         <  1:704932/126‑1 (MQ=255)

                                                                        cGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTg                                                                         >  2:704932/1‑126 (MQ=255)

                                                                        cGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCtttttt                                                           >  2:839798/1‑140 (MQ=255)

                                                                               aaCGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCa                                                    >  1:1052536/1‑140 (MQ=255)

                                                                                aCGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCaa                                                   >  2:260270/1‑140 (MQ=255)

                                                                                    ttattaTATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCaataat                                               <  1:1029095/140‑1 (MQ=255)

                                                                                    ttattaTATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCaataat                                               <  1:260270/140‑1 (MQ=255)

                                                                                    ttattaTATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCaataat                                               <  1:1304903/140‑1 (MQ=255)

                                                                                    ttattaTATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCaataat                                               >  2:321297/1‑140 (MQ=255)

                                                                                    ttattaTATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCaataat                                               <  2:281822/140‑1 (MQ=255)

                                                                                    ttattaTATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCaataat                                               <  1:400137/140‑1 (MQ=255)

                                                                                    ttattaTATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCaataat                                               <  1:1514025/140‑1 (MQ=255)

                                                                                    ttattaTATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCaataat                                               <  2:176274/140‑1 (MQ=255)

                                                                                         atatataCCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGtt                                          <  1:1043134/140‑1 (MQ=255)

                                                                                            tataCCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGt                                                      >  2:625948/1‑125 (MQ=255)

                                                                                            tataCCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGt                                                      <  1:625948/125‑1 (MQ=255)

                                                                                            tataCCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaa                                       >  2:1077158/1‑140 (MQ=255)

                                                                                             ataCCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaac                                      <  2:1209999/140‑1 (MQ=255)

                                                                                             ataCCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaac                                      <  1:1362741/140‑1 (MQ=255)

                                                                                              taCCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaact                                     >  1:1509349/1‑140 (MQ=255)

                                                                                              taCCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaact                                     <  2:350046/140‑1 (MQ=255)

                                                                                               aCCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaacta                                    >  1:110361/1‑140 (MQ=255)

                                                                                               aCCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaacta                                    <  2:563030/140‑1 (MQ=255)

                                                                                                 cATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGttt                                         <  1:341217/133‑1 (MQ=255)

                                                                                                 cATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGttt                                         >  2:341217/1‑133 (MQ=255)

                                                                                                 cATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaactaac                                  <  2:1052536/140‑1 (MQ=255)

                                                                                                 cATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGATTACCTTTTTTGAAGTCAATAATAAGTTtaactaac                                  >  2:790240/1‑140 (MQ=255)

                                                                                                   tttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACAt                                >  2:840677/1‑140 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGGTATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaacta                                    <  1:646039/135‑1 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGGTATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaacta                                    >  2:646039/1‑135 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaact                                     <  2:549134/134‑1 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTtaact                                     >  1:549134/1‑134 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACAtt                               >  1:281671/1‑139 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               >  1:884346/1‑140 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               <  2:110361/140‑1 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               >  2:420102/1‑140 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               >  2:1349437/1‑140 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               >  2:364894/1‑140 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               >  1:623452/1‑140 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               >  1:1461631/1‑140 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               >  1:869362/1‑140 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               >  1:1109653/1‑140 (MQ=255)

                                                                                                    ttCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGATTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               <  1:790240/140‑1 (MQ=255)

                                                                                                     tCAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGt                              >  1:1369223/1‑140 (MQ=255)

                                                                                                      cAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTc                             <  1:81249/140‑1 (MQ=255)

                                                                                                      cAATGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTc                             <  2:1217686/140‑1 (MQ=255)

                                                                                                        ttGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCAT‑AGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATc                          >  1:413110/2‑140 (MQ=255)

                                                                                                        aTGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCAt                           <  1:321297/140‑1 (MQ=255)

                                                                                                         tGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATc                          >  1:911435/1‑140 (MQ=255)

                                                                                                         tGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATc                          >  2:1459467/1‑140 (MQ=255)

                                                                                                         tGTTCTTCAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATc                          >  1:1317271/1‑140 (MQ=255)

                                                                                                           ttcttcAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGt                        >  1:302485/1‑140 (MQ=255)

                                                                                                             cttcAGTCATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               <  2:1493799/131‑1 (MQ=255)

                                                                                                             cttcAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATg                               >  1:1493799/1‑131 (MQ=255)

                                                                                                             cttcAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGtta                      >  2:536110/1‑140 (MQ=255)

                                                                                                              ttcAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGttat                     <  1:944565/140‑1 (MQ=255)

                                                                                                              ttcAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGttat                     >  1:1428220/1‑140 (MQ=255)

                                                                                                              ttcAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACA‑TTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGttatt                    >  2:415896/1‑140 (MQ=255)

                                                                                                                cAGTAATAAAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGttatta                   <  1:135618/140‑1 (MQ=255)

                                                                                                                   taataaAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGaa                <  1:1560436/140‑1 (MQ=255)

                                                                                                                   taataaAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGaa                >  1:1288878/1‑140 (MQ=255)

                                                                                                                     ataaAATTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATc              >  1:942060/1‑140 (MQ=255)

                                                                                                                          aTTAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTGCCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCaaaaa         >  2:1458304/1‑140 (MQ=255)

                                                                                                                           ttAACTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCaaaaaa        >  2:289755/1‑140 (MQ=255)

                                                                                                                             aaCTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAg      >  2:232667/1‑140 (MQ=255)

                                                                                                                             aaCTAGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAg      >  1:388931/1‑140 (MQ=255)

                                                                                                                                 aGTTTATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGcttt  <  2:1109653/140‑1 (MQ=255)

GTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTGAAGTCAATAATAAGTTTAACTAACATGTCATCGTTATTAGAATCAAAAAAAGCTTT  >  NC_000913/2103290‑2103558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A