Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 143 98.3 3330986 99.3% 3307669 138.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,237,763 +C intergenic (‑10/+6) mglC ← / ← mglA D‑galactose/methyl‑galactoside ABC transporter membrane subunit/D‑galactose/methyl‑galactoside ABC transporter ATP binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,237,7591.C100.0% 283.0 / NA 79intergenic (‑6/+10)mglC/mglAD‑galactose/methyl‑galactoside ABC transporter membrane subunit/D‑galactose/methyl‑galactoside ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (36/43);  total (36/43)

TTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑CCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTAACAACTCAGG  >  NC_000913/2237623‑2237891
                                                                                                                                         |                                                                                                                                    
ttACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑ccc                                                                                                                                   >  1:902144/1‑140 (MQ=255)
ttACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑ccc                                                                                                                                   <  1:76227/140‑1 (MQ=255)
 tACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAGTAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑cccc                                                                                                                                  >  2:300629/1‑140 (MQ=255)
 tACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑cccc                                                                                                                                  <  1:708221/140‑1 (MQ=255)
   cTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑ccccct                                                                                                                                <  2:1107987/140‑3 (MQ=255)
   cTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑ccccct                                                                                                                                <  1:1149300/140‑3 (MQ=255)
   cTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑ccccct                                                                                                                                <  2:996266/140‑3 (MQ=255)
      aaGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAATTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑ccccctaat                                                                                                                             >  1:997650/1‑135 (MQ=255)
      aaGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑ccccctaat                                                                                                                             >  1:766321/1‑135 (MQ=255)
        gTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCt                                                                                                                            >  2:655520/1‑140 (MQ=255)
        gTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCt                                                                                                                            >  1:631477/1‑140 (MQ=255)
         ttCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCtt                                                                                                                           <  2:452365/140‑1 (MQ=255)
         ttCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCtt                                                                                                                           >  2:243542/1‑140 (MQ=255)
         ttCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCtt                                                                                                                           >  2:1425492/1‑140 (MQ=255)
           cAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGGAGCCCCCTAATCTTaa                                                                                                                         <  1:113403/140‑1 (MQ=255)
           cAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTaa                                                                                                                         >  2:862271/1‑140 (MQ=255)
           cAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTaa                                                                                                                         >  1:1063971/1‑140 (MQ=255)
            aaCAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑cccc                                                                                                                                  >  1:999524/1‑129 (MQ=255)
            aaCAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑cccc                                                                                                                                  <  2:999524/129‑1 (MQ=255)
              cAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAgg                                                                                                                      >  2:1637599/1‑140 (MQ=255)
                 aCTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGc                                                                                                                   >  1:1268891/1‑140 (MQ=255)
                 aCTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑ccccct                                                                                                                                <  2:1423980/126‑3 (MQ=255)
                 aCTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑ccccct                                                                                                                                >  1:1423980/1‑124 (MQ=255)
                  cTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCa                                                                                                                  >  1:1301148/1‑140 (MQ=255)
                   ttAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCaa                                                                                                                 <  1:243542/140‑1 (MQ=255)
                     aaaaaTGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAaag                                                                                                               <  2:1341925/140‑1 (MQ=255)
                     aaaaaTGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAaag                                                                                                               <  2:1622368/140‑1 (MQ=255)
                          tGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAaagacgca                                                                                                          <  1:950544/140‑1 (MQ=255)
                          tGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAaagacgca                                                                                                          <  1:961490/140‑1 (MQ=255)
                           gTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAaagacgcaa                                                                                                         >  1:35317/1‑140 (MQ=255)
                               ggTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAaagacgcaagacg                                                                                                     >  1:1646431/1‑140 (MQ=255)
                                 tCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAaagacgcaagacgta                                                                                                   <  1:622135/140‑3 (MQ=255)
                                    tGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGaa                                                                                                >  1:863513/1‑140 (MQ=255)
                                           taataatCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGtt                                                                                         >  2:1081664/1‑140 (MQ=255)
                                               aatCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGc                                                                                     <  2:1230107/140‑1 (MQ=255)
                                               aatCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGc                                                                                     <  2:790877/140‑1 (MQ=255)
                                                atCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCg                                                                                    >  1:356509/1‑140 (MQ=255)
                                                    ccAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCgttgt                                                                                <  1:862271/140‑1 (MQ=255)
                                                     cAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCgttgtt                                                                               >  2:1335687/1‑140 (MQ=255)
                                                        cAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCgttgttgtt                                                                            >  1:1487709/1‑140 (MQ=255)
                                                         aaaaTTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGttt                                                                           <  2:997650/140‑1 (MQ=255)
                                                           aaCTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGttttt                                                                         <  2:356509/140‑1 (MQ=255)
                                                             cTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCgt                                                                                   <  1:935898/128‑1 (MQ=255)
                                                             cTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCgt                                                                                   >  2:935898/1‑128 (MQ=255)
                                                             cTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGt                                                                       <  2:35317/140‑1 (MQ=255)
                                                                      cgacgTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAAt                                                              >  2:572364/1‑140 (MQ=255)
                                                                       gacgTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAAtt                                                             >  1:1131345/1‑140 (MQ=255)
                                                                          gTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGAc                                                                 >  1:614808/1‑133 (MQ=255)
                                                                          gTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGAc                                                                 <  2:614808/133‑1 (MQ=255)
                                                                          gTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCg                                                          >  1:864987/1‑140 (MQ=255)
                                                                            aaaTACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGa                                                        <  2:902144/140‑1 (MQ=255)
                                                                                   gCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACgaga                                                 >  1:198048/1‑140 (MQ=255)
                                                                                   gCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACgaga                                                 >  2:631351/1‑140 (MQ=255)
                                                                                    cccTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGAc                                                >  2:854452/1‑140 (MQ=255)
                                                                                      ctctTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCa                                              <  1:300629/140‑1 (MQ=255)
                                                                                      ctctTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCa                                              <  1:1425492/140‑1 (MQ=255)
                                                                                       tctTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCAt                                             <  2:1070922/140‑1 (MQ=255)
                                                                                       tctTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCAt                                             <  2:208187/140‑1 (MQ=255)
                                                                                              ggTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCAt                                      >  2:75075/1‑140 (MQ=255)
                                                                                              ggTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCAt                                      <  1:1335687/140‑1 (MQ=255)
                                                                                                taagtaagAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGa                                    <  2:1063971/140‑1 (MQ=255)
                                                                                                taagtaagAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGa                                    <  2:631477/140‑1 (MQ=255)
                                                                                                 aagtaagAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGAc                                   <  1:1081664/140‑1 (MQ=255)
                                                                                                 aagtaagAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGAc                                   <  1:1429976/140‑1 (MQ=255)
                                                                                                 aagtaagAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGAc                                   <  2:1646431/140‑1 (MQ=255)
                                                                                                 aagtaagAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGAc                                   <  1:75075/140‑1 (MQ=255)
                                                                                                   gtaagAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCa                                 >  1:1127517/1‑140 (MQ=255)
                                                                                                   gtaagAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCa                                 >  2:1061199/1‑140 (MQ=255)
                                                                                                   gtaagAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCa                                 >  1:1135842/1‑140 (MQ=255)
                                                                                                    taagAAAACTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAg                                >  1:1157924/1‑140 (MQ=255)
                                                                                                          aaCTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACg                          <  1:572364/140‑1 (MQ=255)
                                                                                                          aaCTTTTCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACg                          <  2:1135842/140‑1 (MQ=255)
                                                                                                              tttCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCAt                                      >  2:191943/1‑124 (MQ=255)
                                                                                                              tttCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCAt                                      <  1:191943/124‑1 (MQ=255)
                                                                                                              tttCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGAc                                   <  2:61080/127‑1 (MQ=255)
                                                                                                              tttCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGAc                                   >  1:61080/1‑127 (MQ=255)
                                                                                                              tttCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCt                      >  1:402380/1‑140 (MQ=255)
                                                                                                               ttCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTg                     <  2:1449651/140‑1 (MQ=255)
                                                                                                               ttCTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTg                     <  2:864987/140‑1 (MQ=255)
                                                                                                                 cTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTg                     >  1:22553/1‑138 (MQ=255)
                                                                                                                 cTTATTTAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTg                     <  2:22553/138‑1 (MQ=255)
                                                                                                                       tAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAAt                             <  2:1434472/124‑1 (MQ=255)
                                                                                                                       tAACGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAAt                             >  1:1434472/1‑124 (MQ=255)
                                                                                                                          cGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTaac          >  2:485821/1‑140 (MQ=255)
                                                                                                                          cGCACTCATGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTaac          >  1:410294/1‑140 (MQ=255)
                                                                                                                                  tGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTAACAACTCAgg  <  1:485821/140‑1 (MQ=255)
                                                                                                                                  tGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTAACAACTCAgg  <  2:1157924/140‑1 (MQ=255)
                                                                                                                                  tGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTAACAACTCAgg  <  1:655520/140‑1 (MQ=255)
                                                                                                                                  tGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTAACAACTCAgg  <  1:1637599/140‑1 (MQ=255)
                                                                                                                                  tGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTAACAACTCAgg  <  1:631351/140‑1 (MQ=255)
                                                                                                                                  tGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTAACAACTCAgg  <  2:1487709/140‑1 (MQ=255)
                                                                                                                                  tGGGAAGCCCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTCGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTAACAACTCAgg  <  1:738897/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                    
TTACTTAAGTTCAACAGACTTAAAAATGTTGGGTCCTGGAAAATAATAATCGCCAGCAAAACTAAAAGAACGACGTAAATACCGCCCTCTTTCAGGTAAGTAAGAAAACTTTTCTTATTTAACGCACTCATGGGAAG‑CCCCTAATCTTAAAGGTGCAAAGACGCAAGACGCAGAATTTCGTTTTGCGTTGTTGTTTTTGTATCGACAATTCCGGAAACGAGACCATTGCTCATGACCAGAATACGGTCTGTTATCCCTAACAACTCAGG  >  NC_000913/2237623‑2237891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A