Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 143 98.3 3330986 99.3% 3307669 138.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,397,521 A→G V882A (GTG→GCG)  nuoG ← NADH:quinone oxidoreductase subunit G

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,397,5210AG100.0% 302.8 / NA 84V882A (GTG→GCG) nuoGNADH:quinone oxidoreductase subunit G
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (47/37);  total (47/37)

CACCGCTTTGAGGATGGTCAGCAGGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCACCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCTGGGTTGAGTTTGATGTACGGCTG  >  NC_000913/2397386‑2397657
                                                                                                                                       |                                                                                                                                        
caccGCTTTGAGGATGGTCAGCAGGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATGCCCATCGGCAAGCCCGcctg                                                                                                                                      >  1:1477258/1‑140 (MQ=255)
     cTTTGAGGATGGTCAGCAGGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGcctgccctg                                                                                                                                 >  2:1239408/1‑140 (MQ=255)
          aGGATGGTCAGCAGGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGcctgcc                                                                                                                                    >  1:449806/1‑132 (MQ=255)
          aGGATGGTCAGCAGGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGcctgcc                                                                                                                                    <  2:449806/132‑1 (MQ=255)
                gTCAGCAGGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCt                                                                                                                      >  2:902910/1‑140 (MQ=255)
                    gcagGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGcctgccct                                                                                                                                  <  1:1008251/124‑1 (MQ=255)
                    gcagGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGcctgccct                                                                                                                                  >  2:1008251/1‑124 (MQ=255)
                    gcagGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCgg                                                                                                                  >  2:1452144/1‑140 (MQ=255)
                    gcagGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCgg                                                                                                                  >  2:1534852/1‑140 (MQ=255)
                    gcagGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCAGCCTGCCCTGCCGTCAGTCCTTCgg                                                                                                                  >  1:839808/1‑140 (MQ=255)
                          tctcAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCgg                                                                                                                  <  2:1105149/134‑1 (MQ=255)
                          tctcAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCgg                                                                                                                  >  1:1105149/1‑134 (MQ=255)
                           ctcAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTc                                                                                                           >  1:1645728/1‑140 (MQ=255)
                             cAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATGCCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCaa                                                                                                         <  2:1477258/140‑1 (MQ=255)
                               aTCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAAcc                                                                                                       >  2:1504966/1‑140 (MQ=255)
                                tCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCg                                                                                                      <  2:1266156/140‑1 (MQ=255)
                                    ttCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAg                                                                                                  >  2:1212680/1‑140 (MQ=255)
                                    ttCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAg                                                                                                  >  1:1112179/1‑140 (MQ=255)
                                    ttCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAg                                                                                                  >  1:628967/1‑140 (MQ=255)
                                      ccGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCg                                                                                                <  2:1527373/140‑1 (MQ=255)
                                       cGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGc                                                                                                                 <  2:568754/122‑1 (MQ=255)
                                       cGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGc                                                                                                                 >  1:568754/1‑122 (MQ=255)
                                        ggTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCAGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTg                                                                                              <  2:839808/140‑1 (MQ=255)
                                          tGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGAc                                                                                            <  1:1452144/140‑1 (MQ=255)
                                             tatCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCgt                                                                                         <  2:279115/140‑1 (MQ=255)
                                              atCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCgtg                                                                                        >  2:10667/1‑140 (MQ=255)
                                              atCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCgtg                                                                                        >  1:541295/1‑140 (MQ=255)
                                              atCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGC‑‑GACCGTGtt                                                                                      >  1:479331/1‑140 (MQ=255)
                                              atCCAACTCACTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCgtg                                                                                        >  1:958647/1‑140 (MQ=255)
                                                  aaCTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGc                                                                                    <  1:10667/140‑1 (MQ=255)
                                                   aCTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGcc                                                                                   >  2:921087/1‑140 (MQ=255)
                                                      cATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATc                                                                                <  2:1645728/140‑1 (MQ=255)
                                                       aTTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCg                                                                               >  1:181889/1‑140 (MQ=255)
                                                         tgttgtGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATc                                                                                >  1:384940/1‑137 (MQ=255)
                                                         tgttgtGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATc                                                                                <  2:384940/137‑1 (MQ=255)
                                                         tgttgtGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTa                                                                             >  1:1133749/1‑140 (MQ=255)
                                                           ttgtGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAAc                                                                           <  2:958647/140‑1 (MQ=255)
                                                                cctcctTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAg                                                                      >  1:681536/1‑140 (MQ=255)
                                                                cctcctTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAg                                                                      >  2:461961/1‑140 (MQ=255)
                                                                   cctTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTg                                                                                     >  1:798027/1‑122 (MQ=255)
                                                                   cctTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTg                                                                                     <  2:798027/122‑1 (MQ=255)
                                                                   cctTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGgag                                                                   <  1:1239408/140‑1 (MQ=255)
                                                                   cctTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGgag                                                                   <  2:1112179/140‑1 (MQ=255)
                                                                     ttGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCCGCGTGACCGTGTTGCCATCGTAACTAAAGGAGAc                                                                 >  2:1194423/1‑140 (MQ=255)
                                                                     ttGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGAc                                                                 >  1:102516/1‑140 (MQ=255)
                                                                     ttGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGAc                                                                 >  1:217961/1‑140 (MQ=255)
                                                                     ttGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGAc                                                                 <  2:102516/140‑1 (MQ=255)
                                                                     ttGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGAc                                                                 <  1:1091525/140‑1 (MQ=255)
                                                                            ccTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTa                                                          >  1:928515/1‑140 (MQ=255)
                                                                             cTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTAc                                                         >  2:1175454/1‑140 (MQ=255)
                                                                             cTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTAc                                                         >  1:980131/1‑140 (MQ=255)
                                                                             cTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTAc                                                         >  2:77866/1‑140 (MQ=255)
                                                                              tCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTAcc                                                        >  1:760697/1‑140 (MQ=255)
                                                                               cAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCt                                                       <  2:980131/140‑1 (MQ=255)
                                                                               cAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCt                                                       >  1:1544154/1‑140 (MQ=255)
                                                                                  gATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCg                                                    >  2:1406049/1‑140 (MQ=255)
                                                                                   aTGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCTTCGTAACTAAAGGAGACGCGTGTACCTGCGt                                                   <  2:628967/140‑1 (MQ=255)
                                                                                   aTGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGt                                                   <  1:921087/140‑1 (MQ=255)
                                                                                   aTGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGt                                                   <  2:115541/140‑1 (MQ=255)
                                                                                   aTGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGt                                                   <  2:217961/140‑1 (MQ=255)
                                                                                    tGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGAcgc                                                               >  2:1166817/1‑127 (MQ=255)
                                                                                    tGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGAcgc                                                               <  1:1166817/127‑1 (MQ=255)
                                                                                        cgcCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTcaca                                              >  2:257285/1‑140 (MQ=255)
                                                                                        cgcCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTcaca                                              >  1:1144359/1‑140 (MQ=255)
                                                                                        cgcCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTcaca                                              >  2:1303187/1‑140 (MQ=255)
                                                                                        cgcCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTcaca                                              >  1:1447118/1‑140 (MQ=255)
                                                                                                      ggAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGc                                <  2:760697/140‑1 (MQ=255)
                                                                                                      ggAGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGc                                <  1:257285/140‑1 (MQ=255)
                                                                                                        aGCAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGC‑‑GACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATcc                            <  2:479331/140‑1 (MQ=255)
                                                                                                          cAATGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATcc                            <  2:1447118/140‑1 (MQ=255)
                                                                                                           aaTGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCg                           <  1:1303187/140‑1 (MQ=255)
                                                                                                           aaTGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCg                           <  2:181889/140‑1 (MQ=255)
                                                                                                            aTGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGc                          <  1:723804/140‑1 (MQ=255)
                                                                                                            aTGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGc                          >  1:916764/1‑140 (MQ=255)
                                                                                                             tGCCGGACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGGCCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCt                         >  2:1159142/1‑140 (MQ=255)
                                                                                                                 ggACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCTGGGt                     <  2:916764/140‑1 (MQ=255)
                                                                                                                  gACATACCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCTGGGtt                    <  2:928515/140‑1 (MQ=255)
                                                                                                                       aCCCATCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCTGGGTTGAGtt               <  1:1212680/140‑1 (MQ=255)
                                                                                                                           aTCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCt                         <  2:687264/126‑1 (MQ=255)
                                                                                                                           aTCGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCt                         >  1:687264/1‑126 (MQ=255)
                                                                                                                             cGGCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCTGGGTTGAGTTTGATGt         >  2:814457/1‑140 (MQ=255)
                                                                                                                               gCAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCACTGGGTTGAGTTTGATGTAc       >  1:960656/1‑140 (MQ=255)
                                                                                                                                cAAGCCCGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCTGGGTTGAGTTTGATGTACg      >  2:344839/1‑140 (MQ=255)
                                                                                                                                    cccGCCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCTGGGTTGAGTTTGATGTACGGCTg  <  1:339111/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
CACCGCTTTGAGGATGGTCAGCAGGATCTCAATCAGTTCCGGTGATATCCAACTCATTGTTGTGCCTCCTTGAGATCCTCAAGATGCGCGCCAGCCAGCACCGGAGCAATGCCGGACATACCCATCGGCAAGCCCACCTGCCCTGCCGTCAGTCCTTCGGCGATTTCAACCGGCAGCGTGACCGTGTTGCCATCGTAACTAAAGGAGACGCGTGTACCTGCGTTCACACCCAACTTCGCGGCATCCGCTGGGTTGAGTTTGATGTACGGCTG  >  NC_000913/2397386‑2397657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A