Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 143 98.3 3330986 99.3% 3307669 138.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,414,845 T→C R33R (CGT→CGC)  pta → phosphate acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,414,8450TC97.8% 300.4 / ‑2.7 89R33R (CGT→CGC) ptaphosphate acetyltransferase
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (52/35);  total (53/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01

CCCGCCAAATCGGCGGTAACGAAAGAGGATAAACCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGCTACGTTGAAGGTCTG  >  NC_000913/2414712‑2414980
                                                                                                                                     |                                                                                                                                       
cccGCCAAATCGGCGGTAACGAAAGAGGATAAACCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGc                                                                                                                                   <  2:1072658/140‑1 (MQ=255)
  cGCCAAATCGGCGGTAACGAAAGAGGATAAACCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGt                                                                                                                                 >  2:658486/1‑140 (MQ=255)
                  aCGAAAGAGGATAAACCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCt                                                                                                                 >  2:238898/1‑140 (MQ=255)
                  aCGAAAGAGGATAAACCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCt                                                                                                                 <  2:310163/140‑1 (MQ=255)
                       agagGATAAACCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGcc                                                                                                            >  1:966854/1‑140 (MQ=255)
                          ggATAAACCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCcgcg                                                                                                         >  1:265626/1‑140 (MQ=255)
                            aTAAACCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTa                                                                                                       >  1:730423/1‑140 (MQ=255)
                               aaCCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCg                                                                                                    <  2:1140875/140‑1 (MQ=255)
                                aCCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCgg                                                                                                   >  1:186506/1‑140 (MQ=255)
                                     gtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCg                                                                                              >  1:687939/1‑140 (MQ=255)
                                     gtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCg                                                                                              >  2:1305967/1‑140 (MQ=255)
                                     gtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCg                                                                                              >  2:850208/1‑140 (MQ=255)
                                     gtCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCg                                                                                              >  2:378413/1‑140 (MQ=255)
                                            attattatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGcc                                                                                       <  2:134527/140‑1 (MQ=255)
                                            attattatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGcc                                                                                       >  2:1241508/1‑140 (MQ=255)
                                                ttatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   <  1:889975/140‑1 (MQ=255)
                                                ttatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   <  1:183521/140‑1 (MQ=255)
                                                ttatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   <  2:966854/140‑1 (MQ=255)
                                                ttatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   <  1:378413/140‑1 (MQ=255)
                                                ttatGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCACGTACCGGTGGCGATGCGCCCGAt                                                                                   <  1:238898/140‑1 (MQ=255)
                                                     cTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATgcgc                                                                                        >  1:859087/1‑130 (MQ=255)
                                                     cTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATgcgc                                                                                        <  2:859087/130‑1 (MQ=255)
                                                     cTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGAc                                                                              >  2:562469/1‑140 (MQ=255)
                                                     cTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGAc                                                                              >  2:989324/1‑140 (MQ=255)
                                                     cTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGAc                                                                              >  2:562840/1‑140 (MQ=255)
                                                       gATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   <  2:230849/133‑1 (MQ=255)
                                                       gATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   >  1:230849/1‑133 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   <  1:538735/132‑1 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   >  2:538735/1‑132 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAg                                                                                <  1:1371265/135‑1 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAg                                                                                >  1:459786/1‑135 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAg                                                                                <  2:459786/135‑1 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAg                                                                                >  2:1371265/1‑135 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTAc                                                                           >  1:174343/1‑140 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTAc                                                                           >  2:1106476/1‑140 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTAc                                                                           >  2:805135/1‑140 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTAc                                                                           >  2:597164/1‑140 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTAc                                                                           >  2:1645680/1‑140 (MQ=255)
                                                        aTCCCTACCGGAACCAGCGT‑GGTCTGAACAGCGGCCACCTTGGGGTGGTCCGTGGAAAGGGACGCAAAAGCGTTCGCCTTAGCGGTTTTAAACCCTTCCCTCAGCCGCGGAACCGGGGGGGTGCGCCCGGTCaaaacacc                                                                          >  2:1326236/1‑133 (MQ=255)
                                                          cccTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   <  2:198927/130‑1 (MQ=255)
                                                          cccTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   >  1:198927/1‑130 (MQ=255)
                                                          cccTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGAc                                                                              >  1:1615085/1‑135 (MQ=255)
                                                          cccTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGAc                                                                              <  2:1615085/135‑1 (MQ=255)
                                                             tACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTa                                                                      >  2:845429/1‑140 (MQ=255)
                                                             tACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTa                                                                      >  1:446269/1‑140 (MQ=255)
                                                             tACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGCGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTa                                                                      >  2:227654/1‑140 (MQ=255)
                                                               ccGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   >  1:1425819/1‑125 (MQ=255)
                                                               ccGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   <  2:1425819/125‑1 (MQ=255)
                                                               ccGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   <  2:77753/125‑1 (MQ=255)
                                                               ccGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGAt                                                                                   >  1:77753/1‑125 (MQ=255)
                                                               ccGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTa                                                                            <  2:25189/132‑1 (MQ=255)
                                                               ccGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTa                                                                            >  1:25189/1‑132 (MQ=255)
                                                               ccGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATc                                                                    >  1:1191645/1‑140 (MQ=255)
                                                                  gAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATcgtg                                                                 >  2:19060/1‑140 (MQ=255)
                                                                  gAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATcgtg                                                                 <  2:1360733/140‑1 (MQ=255)
                                                                  gAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATcgtg                                                                 >  2:1565620/1‑140 (MQ=255)
                                                                    aCCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATcgtgcg                                                               >  1:686212/1‑140 (MQ=255)
                                                                    aCCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGAGATGCGCCCGATCAGACTACGACTATcgtgcg                                                               >  2:1470931/1‑140 (MQ=255)
                                                                        gCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGtgcgtgcg                                                           <  1:19060/140‑1 (MQ=255)
                                                                        gCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGtgcgtgcg                                                           <  1:1106476/140‑1 (MQ=255)
                                                                        gCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGtgcgtgcg                                                           <  2:446269/140‑1 (MQ=255)
                                                                         cGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGTCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGa                                                          >  2:1301846/1‑140 (MQ=255)
                                                                         cGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGtgcgtgcg                                                           >  2:950616/1‑139 (MQ=255)
                                                                         cGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGtgcgtgcg                                                           <  1:950616/139‑1 (MQ=255)
                                                                         cGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGa                                                          >  1:908278/1‑140 (MQ=255)
                                                                         cGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGa                                                          >  1:156985/1‑140 (MQ=255)
                                                                                  gACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTcca                                                 >  1:1330872/1‑140 (MQ=255)
                                                                                        cGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCacga                                           >  1:1606616/1‑140 (MQ=255)
                                                                                          tCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCacgacg                                         <  1:1565620/140‑1 (MQ=255)
                                                                                            aGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGc                                       <  2:687939/140‑1 (MQ=255)
                                                                                            aGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGc                                       <  1:529599/140‑1 (MQ=255)
                                                                                                  ggCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGccgctga                                 >  2:576099/1‑140 (MQ=255)
                                                                                                  ggCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGccgctga                                 >  1:46797/1‑140 (MQ=255)
                                                                                                        aTCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGccgctgaaccgct                           >  1:1052740/1‑140 (MQ=255)
                                                                                                        aTCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGccgctgaaccgct                           <  1:1470931/140‑1 (MQ=255)
                                                                                                        aTCCGTGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGccgctgaaccgct                           >  2:1520732/1‑140 (MQ=255)
                                                                                                             tGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGaaaa                      >  2:490391/1‑140 (MQ=255)
                                                                                                             tGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGaaaa                      >  1:1330741/1‑140 (MQ=255)
                                                                                                             tGCAATGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGaaaa                      >  2:899311/1‑140 (MQ=255)
                                                                                                                 aTGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAg                  <  2:174343/140‑1 (MQ=255)
                                                                                                                  tGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGc                 <  1:805135/140‑1 (MQ=255)
                                                                                                                  tGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGc                 <  1:845429/140‑1 (MQ=255)
                                                                                                                  tGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGc                 <  2:1052740/140‑1 (MQ=255)
                                                                                                                  tGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGc                 <  2:730423/140‑1 (MQ=255)
                                                                                                                  tGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGc                 <  2:1191645/140‑1 (MQ=255)
                                                                                                                  tGGAACGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGc                 >  1:1161318/1‑140 (MQ=255)
                                                                                                                       cGCAAAGGCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGCTACGt            <  2:908278/140‑1 (MQ=255)
                                                                                                                              gCGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGCTACGTTGAAGGt     <  2:1330741/140‑1 (MQ=255)
                                                                                                                               cGTTCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGCTACGTTGAAGGTc    >  1:1369066/1‑140 (MQ=255)
                                                                                                                                 ttCGCCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGCTACGTTGAAGGTCTg  >  2:1161939/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                       
CCCGCCAAATCGGCGGTAACGAAAGAGGATAAACCGTGTCCCGTATTATTATGCTGATCCCTACCGGAACCAGCGTCGGTCTGACCAGCGTCAGCCTTGGCGTGATCCGTGCAATGGAACGCAAAGGCGTTCGTCTGAGCGTTTTCAAACCTATCGCTCAGCCGCGTACCGGTGGCGATGCGCCCGATCAGACTACGACTATCGTGCGTGCGAACTCTTCCACCACGACGGCCGCTGAACCGCTGAAAATGAGCTACGTTGAAGGTCTG  >  NC_000913/2414712‑2414980

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A