Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	143	98.3	3330986	99.3%	3307669	138.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,867,326	C→T	G33S (GGC→AGC)	ibpA ←	small heat shock protein IbpA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,867,326	0	C	T	100.0%	462.5 / NA	130	G33S (GGC→AGC)	ibpA	small heat shock protein IbpA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (54/76); total (54/76)

Only 100 of 130 total aligned reads displayed.

CGGCGTGAGCACCTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCCGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTAAGACCTTC  >  NC_000913/3867191‑3867462

cgGCGTGAGCACCTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCa                                                                                                                                      <  2:565500/140‑1 (MQ=255)

 ggCGTGAGCACCTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCAt                                                                                                                                     <  2:651646/140‑1 (MQ=255)

   cGTGAGCACCTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTa                                                                                                                                   <  2:789211/140‑1 (MQ=255)

     tGAGCACCTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTAct                                                                                                                                 <  1:1293702/140‑1 (MQ=255)

       aGCACCTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTActct                                                                                                                               <  1:1324861/140‑1 (MQ=255)

            cTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTActctggctc                                                                                                                          <  1:940185/140‑1 (MQ=255)

            cTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTActctggctc                                                                                                                          >  1:265378/1‑140 (MQ=255)

            cTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTActctggctc                                                                                                                          <  2:447111/140‑1 (MQ=255)

            cTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTActctggctc                                                                                                                          <  2:471074/140‑1 (MQ=255)

            cTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTActctggctc                                                                                                                          <  1:956716/140‑1 (MQ=255)

                 accaccAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGgtt                                                                                                                     <  1:68901/140‑1 (MQ=255)

                    accaGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGgttgtt                                                                                                                  <  1:31212/140‑1 (MQ=255)

                      cagcagATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTGATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGtttt                                                                                                                >  2:1159510/1‑140 (MQ=255)

                      cagcagATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGtttt                                                                                                                >  2:483230/1‑140 (MQ=255)

                      cagcagATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGtttt                                                                                                                >  2:1639750/1‑140 (MQ=255)

                      cagcagATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCACCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGATTTCGACTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGtttt                                                                                                                >  1:1521093/1‑140 (MQ=255)

                           gATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAg                                                                                                           <  2:1163893/140‑1 (MQ=255)

                           gATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAg                                                                                                           <  2:142033/140‑1 (MQ=255)

                           gATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGATGTTTTCTAAg                                                                                                           <  2:11153/140‑1 (MQ=255)

                            aTTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGt                                                                                                          >  2:810539/1‑140 (MQ=255)

                             ttATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGgt                                                                                                                      <  1:958809/127‑1 (MQ=255)

                             ttATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGgt                                                                                                                      >  2:958809/1‑127 (MQ=255)

                                tCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGtt                                                                                                      <  1:483230/140‑1 (MQ=255)

                                tCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGtt                                                                                                      >  2:548258/1‑140 (MQ=255)

                                    gggCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTaaac                                                                                                  >  1:303765/1‑140 (MQ=255)

                                     ggCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTaaaca                                                                                                 >  1:1647830/1‑140 (MQ=255)

                                      gCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTaaacaa                                                                                                >  2:1263679/1‑140 (MQ=255)

                                      gCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGCAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTa                                                                                                             >  2:447243/1‑127 (MQ=255)

                                      gCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGCAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTa                                                                                                             <  1:447243/127‑1 (MQ=255)

                                       cGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTGCTCTGGCTCTGGTTGTTTTCTAAGTGGTTaaacaaa                                                                                               <  1:843654/140‑1 (MQ=255)

                                        ggTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGt                                                                                                       <  1:797815/131‑1 (MQ=255)

                                        ggTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGt                                                                                                       >  2:797815/1‑131 (MQ=255)

                                          tAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAg                                                                                                           <  2:644372/125‑1 (MQ=255)

                                          tAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTaaacaaa                                                                                               >  2:110333/1‑137 (MQ=255)

                                          tAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTaaacaaa                                                                                               <  1:110333/137‑1 (MQ=255)

                                             tttCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCa                                                                                         <  2:303765/140‑1 (MQ=255)

                                             tttCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCa                                                                                         <  1:1621504/140‑1 (MQ=255)

                                               tCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCaaa                                                                                       <  2:829222/140‑1 (MQ=255)

                                                    ttCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCaa                                                                                  <  1:893744/140‑1 (MQ=255)

                                                      cGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATa                                                                                >  1:1063613/1‑140 (MQ=255)

                                                       gCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAg                                                                               <  2:726097/140‑1 (MQ=255)

                                                        ctctCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTaaacaaa                                                                                               <  2:1030708/123‑1 (MQ=255)

                                                        ctctCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGc                                                                              >  2:717393/1‑140 (MQ=255)

                                                        ctctCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGc                                                                              >  1:1249239/1‑140 (MQ=255)

                                                        ctctCACCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTaaacaaa                                                                                               >  1:1030708/1‑123 (MQ=255)

                                                            cAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGaa                                                                          <  1:717393/140‑1 (MQ=255)

                                                                aaaaCCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGt                                                                      <  2:1249239/140‑1 (MQ=255)

                                                                    ccAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAg                                                                  <  2:1063613/140‑1 (MQ=255)

                                                                     cAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGc                                                                 <  2:709136/140‑1 (MQ=255)

                                                                     cAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGc                                                                 <  1:548258/140‑1 (MQ=255)

                                                                       gCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCgg                                                               >  2:307235/1‑140 (MQ=255)

                                                                       gCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCgg                                                               >  1:705610/1‑140 (MQ=255)

                                                                       gCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCgg                                                               >  2:884133/1‑140 (MQ=255)

                                                                       gCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCCACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCgg                                                               >  2:689406/1‑140 (MQ=255)

                                                                          acaGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGa                                                            <  2:1095874/140‑1 (MQ=255)

                                                                          acaGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGa                                                            <  2:759178/140‑1 (MQ=255)

                                                                              cGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAg                                                                  >  2:854445/1‑130 (MQ=255)

                                                                              cGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAg                                                                  <  1:854445/130‑1 (MQ=255)

                                                                               gATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAAt                                                       <  2:1521093/140‑1 (MQ=255)

                                                                                  aGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCaa                                                    >  1:85537/1‑140 (MQ=255)

                                                                                     aaTGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGt                                                 <  1:891790/140‑1 (MQ=255)

                                                                                      aTGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAg                                                                  >  1:171248/1‑122 (MQ=255)

                                                                                        gCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTAc                                              >  2:1142468/1‑140 (MQ=255)

                                                                                          ggTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGc                                            <  2:265378/140‑1 (MQ=255)

                                                                                          ggTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGc                                            <  1:689406/140‑1 (MQ=255)

                                                                                           gTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCa                                           <  1:1231770/140‑1 (MQ=255)

                                                                                             aaTGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATa                                         <  2:338614/140‑1 (MQ=255)

                                                                                              aTGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATaa                                        >  1:1616640/1‑140 (MQ=255)

                                                                                              aTGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATaa                                        >  2:188555/1‑140 (MQ=255)

                                                                                              aTGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATaa                                        >  1:888228/1‑140 (MQ=255)

                                                                                              aTGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATaa                                        >  1:822672/1‑140 (MQ=255)

                                                                                              aTGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATaa                                        >  1:435035/1‑140 (MQ=255)

                                                                                                   tttCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAAt                                   <  1:884133/140‑1 (MQ=255)

                                                                                                   tttCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAAt                                   <  1:652772/140‑1 (MQ=255)

                                                                                                   tttCGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAAt                                   <  2:1616640/140‑1 (MQ=255)

                                                                                                      cGTCTACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGc                                >  1:996977/1‑140 (MQ=255)

                                                                                                          tACCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCt                            >  2:557556/1‑140 (MQ=255)

                                                                                                           aCCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATaa                                        <  2:1611355/127‑1 (MQ=255)

                                                                                                           aCCAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATaa                                        >  1:1611355/1‑127 (MQ=255)

                                                                                                            ccAGTTCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGa                          >  2:403247/1‑140 (MQ=255)

                                                                                                                ttCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAAt                                   >  1:1381291/1‑127 (MQ=255)

                                                                                                                ttCAACGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAAt                                   <  2:1381291/127‑1 (MQ=255)

                                                                                                                   aaCGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGc                   <  2:85537/140‑1 (MQ=255)

                                                                                                                     cGTTATACGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCga                 >  2:1165097/1‑140 (MQ=255)

                                                                                                                          taCGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATg            >  2:355900/1‑140 (MQ=255)

                                                                                                                            cGGAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATGAGCGAGAATGTa          <  1:1142468/140‑1 (MQ=255)

                                                                                                                              gAGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTAAg        <  1:403247/140‑1 (MQ=255)

                                                                                                                               aGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCga                 >  2:922565/1‑130 (MQ=255)

                                                                                                                               aGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTAAGa       >  1:1493211/1‑140 (MQ=255)

                                                                                                                               aGGGTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACCGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCga                 >  1:1065604/1‑130 (MQ=255)

                                                                                                                                gggTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTAAGAc      >  2:1543408/1‑140 (MQ=255)

                                                                                                                                 ggTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCga                 <  2:1387622/128‑1 (MQ=255)

                                                                                                                                 ggTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCga                 >  1:1387622/1‑128 (MQ=255)

                                                                                                                                 ggTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTa          <  2:1270944/135‑1 (MQ=255)

                                                                                                                                 ggTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTa          >  1:1270944/1‑135 (MQ=255)

                                                                                                                                 ggTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTAAGAcc     >  2:1405976/1‑140 (MQ=255)

                                                                                                                                 ggTAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTAAGAcc     >  1:479804/1‑140 (MQ=255)

                                                                                                                                   tAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTAAGACCtt   <  1:307235/140‑1 (MQ=255)

                                                                                                                                   tAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTAAGACCtt   <  2:1493211/140‑1 (MQ=255)

                                                                                                                                   tAGCTGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTAAGACCtt   <  1:188555/140‑1 (MQ=255)

CGGCGTGAGCACCTTTCACCACCAGCAGATTATCCTGGGCGGTAATTTCCAGTTCGCTCTCAGCAAAACCAGCCACAGCGATAGCAATGCGGTAATGGTTTTCGTCTACCAGTTCAACGTTATACGGAGGGTAGCCGCCATTACTCTGGCTCTGGTTGTTTTCTAAGTGGTTAAACAAACGGTCAAATCCAATAGCAGAACGGTAAAGCGGGGATAAATCAAAGTTACGCATAATCAATAGCTCCTGAAATCAGCGAGAATGTAAGACCTTC  >  NC_000913/3867191‑3867462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A