Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	228	65.7	2434974	91.7%	2232871	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,862,532	Δ1 bp	intergenic (‑103/‑239)	msrB ← / → gapA	methionine sulfoxide reductase B/glyceraldehyde‑3‑phosphate dehydrogenase A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,862,530	0	A	.	98.3%	238.0 / ‑1.9	59	intergenic (‑101/‑241)	msrB/gapA	methionine sulfoxide reductase B/glyceraldehyde‑3‑phosphate dehydrogenase A
Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (31/27); total (32/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01

ATTTTTTTTCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCA  >  NC_000913/1862391‑1862662

aTTTTTTTTCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTcgacga                                                                                                                                      <  1:553272/140‑1 (MQ=255)

    tttttCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGaatgg                                                                                                                                  <  2:260795/140‑4 (MQ=255)

    tttttCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCT‑‑CATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCt                                                                                                                               <  1:190466/140‑1 (MQ=255)

     ttttCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGaatggc                                                                                                                                 <  1:903388/140‑5 (MQ=255)

     ttttCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGaatggc                                                                                                                                 <  1:1166086/140‑5 (MQ=255)

     ttttCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGaatggc                                                                                                                                 <  1:326222/140‑5 (MQ=255)

       ttCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTg                                                                                                                              <  1:551630/140‑1 (MQ=255)

                         ggTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGaa                                                                                                            >  2:519801/1‑140 (MQ=255)

                            ttattaGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACCGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAAt                                                                                                         <  1:1045981/140‑1 (MQ=255)

                                    cATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACAtttt                                                                                                 >  1:1037653/1‑140 (MQ=255)

                                    cATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACAtttt                                                                                                 >  2:456181/1‑140 (MQ=255)

                                    cATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACAtttt                                                                                                 >  2:873901/1‑140 (MQ=255)

                                       ttGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTAt                                                                                              >  2:104409/1‑140 (MQ=255)

                                       ttGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTAt                                                                                              <  2:145180/140‑1 (MQ=255)

                                                 ctcACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGcc                                                                                    <  2:329275/140‑1 (MQ=255)

                                                    aCTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCtt                                                                                 >  1:688454/1‑140 (MQ=255)

                                                         aaTCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTaaaa                                                                            >  2:965943/1‑140 (MQ=255)

                                                           tCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAAtt                                                                          >  2:70436/1‑140 (MQ=255)

                                                           tCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAAtt                                                                          >  2:515319/1‑140 (MQ=255)

                                                                cTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCGCCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCgggg                                                                     >  2:564619/1‑140 (MQ=255)

                                                                cTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCgggg                                                                     >  2:974170/1‑140 (MQ=255)

                                                                  cacaTTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCGCATTTTTATCGTAATTGCCCTTTAAAATTCGGGgcg                                                                   <  1:564619/140‑1 (MQ=255)

                                                                  cacaTTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGgcg                                                                   <  1:965943/140‑1 (MQ=255)

                                                                  cacaTTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGgcg                                                                   <  1:403438/140‑1 (MQ=255)

                                                                   acaTTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGgcgc                                                                  <  1:653934/140‑1 (MQ=255)

                                                                     aTTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCg                                                                <  2:205257/140‑1 (MQ=255)

                                                                      ttACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGa                                                               >  1:1063450/1‑140 (MQ=255)

                                                                         cGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGAccc                                                            >  2:1007314/1‑140 (MQ=255)

                                                                         cGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGAccc                                                            >  2:130374/1‑140 (MQ=255)

                                                                         cGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGAccc                                                            >  2:52051/1‑140 (MQ=255)

                                                                         cGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGAccc                                                            >  2:919109/1‑140 (MQ=255)

                                                                          gTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGAcccc                                                           >  2:365524/1‑140 (MQ=255)

                                                                          gTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGAcccc                                                           >  1:203582/1‑140 (MQ=255)

                                                                             aCTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCAt                                                         >  1:11552/1‑140 (MQ=255)

                                                                               tGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCAtgtg                                                      <  2:1037653/140‑1 (MQ=255)

                                                                               tGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCAtgtg                                                      >  2:1187972/1‑140 (MQ=255)

                                                                                   tCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGtct                                                  >  2:371117/1‑140 (MQ=255)

                                                                                     tAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCa                                                <  2:22799/140‑1 (MQ=255)

                                                                                     tAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCa                                                <  1:485850/140‑1 (MQ=255)

                                                                                     tAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCa                                                <  1:519801/140‑1 (MQ=255)

                                                                                     tAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCa                                                <  1:873901/140‑1 (MQ=255)

                                                                                         aaaaCATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGcc                                            <  1:104409/140‑1 (MQ=255)

                                                                                           aaCATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCa                                          <  2:470776/140‑1 (MQ=255)

                                                                                                tAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGa                                     >  2:21749/1‑140 (MQ=255)

                                                                                                  acacCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAag                                   >  1:471611/1‑140 (MQ=255)

                                                                                                    acCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAagag                                 <  1:21749/140‑1 (MQ=255)

                                                                                                       aaCTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGa                              >  2:938133/1‑140 (MQ=255)

                                                                                                       aaCTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGa                              <  1:456181/140‑1 (MQ=255)

                                                                                                       aaCTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGa                              >  2:166401/1‑140 (MQ=255)

                                                                                                        aCTGGCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAg                             >  1:907726/1‑140 (MQ=255)

                                                                                                            gCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGa                         >  1:602038/1‑140 (MQ=255)

                                                                                                            gCAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGa                         >  2:751344/1‑140 (MQ=255)

                                                                                                             cAAAATTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGag                        >  2:214814/1‑140 (MQ=255)

                                                                                                              aaaaTTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagt                       <  1:751344/140‑1 (MQ=255)

                                                                                                              aaaaTTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagt                       <  2:381088/140‑1 (MQ=255)

                                                                                                                 aTTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagtcag                    <  2:688454/140‑1 (MQ=255)

                                                                                                                 aTTTTGTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGagtcag                    <  2:203582/140‑1 (MQ=255)

                                                                                                                      gTCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTcgcg               >  1:982659/1‑140 (MQ=255)

                                                                                                                       tCCTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGt              <  1:52051/140‑1 (MQ=255)

                                                                                                                         cTAAACTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTaa            <  2:907726/140‑1 (MQ=255)

                                                                                                                            aaCTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGc         >  1:102286/1‑140 (MQ=255)

                                                                                                                              cTTGATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCtt       <  2:102286/140‑1 (MQ=255)

                                                                                                                                 gATCTCGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAgg    >  1:176444/1‑140 (MQ=255)

                                                                                                                                   tctcGACG‑AATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGca  <  2:982659/140‑1 (MQ=255)

ATTTTTTTTCAGTTCTTCTGCCGAAGGTTTATTAGCCATTTGCTCACATCTCACTTTAATCGTGCTCACATTACGTGACTGATTCTAACAAAACATTAACACCAACTGGCAAAATTTTGTCCTAAACTTGATCTCGACGAAATGGCTGCACCTAAATCGTGATGAAAATCACATTTTTATCGTAATTGCCCTTTAAAATTCGGGGCGCCGACCCCATGTGGTCTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATGCTTAGGCA  >  NC_000913/1862391‑1862662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A